BLASTX 7.6.2
Query= RU32029 /QuerySize=199
(198 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD | ATHMG ... 108 1e-024
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 60 2e-010
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 60 2e-010
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 60 2e-010
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 60 3e-010
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 60 3e-010
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 60 3e-010
TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HM... 48 9e-007
>TAIR9_protein||AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS
THALIANA HIGH MOBILITY GROUP); transcription factor |
chr3:10784954-10788498 FORWARD
Length = 647
Score = 108 bits (268), Expect = 1e-024
Identities = 47/59 (79%), Positives = 58/59 (98%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNPGIAFTDVGRVLGDKWKKMSAEEKEPYEAKAR 198
DPNAPKRAMSGFMFFSQMER+N+KK++PGIAF +VG+VLGDKW++MSA++KEPYEAKA+
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 60 bits (144), Expect = 2e-010
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNPGI-AFTDVGRVLGDKWKKMSAEEKEPYEAKA 195
DPN PKRA S F F + R KK+NP + A + VG+ G KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 60 bits (144), Expect = 2e-010
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNPGI-AFTDVGRVLGDKWKKMSAEEKEPYEAKA 195
DPN PKRA S F F + R KK+NP + A + VG+ G KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 60 bits (144), Expect = 2e-010
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNPGI-AFTDVGRVLGDKWKKMSAEEKEPYEAKA 195
DPN PKRA S F F + R KK+NP + A + VG+ G KWK MS EK PYE KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 60 bits (143), Expect = 3e-010
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNP-GIAFTDVGRVLGDKWKKMSAEEKEPYEAKA 195
DPN PKR S F F + RE KK+NP + VG+ GDKWK +S EK PY AKA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 60 bits (143), Expect = 3e-010
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNP-GIAFTDVGRVLGDKWKKMSAEEKEPYEAKA 195
DPN PKR S F F + RE KK+NP + VG+ GDKWK +S EK PY AKA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 60 bits (143), Expect = 3e-010
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 DPNAPKRAMSGFMFFSQMERENVKKDNP-GIAFTDVGRVLGDKWKKMSAEEKEPYEAKA 195
DPN PKR S F F + RE KK+NP + VG+ GDKWK +S EK PY AKA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
>TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:6760898-6763272 REVERSE
Length = 447
Score = 48 bits (113), Expect = 9e-007
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +1
Query: 37 KRAMSGFMFFSQMERENVKKDNPGIAFTDVGRVLGDKWKKMSAEEKEPYEAK 192
KR + ++ + + VKK NP F + +LG KWK +SAEEK+PYE K
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,007,806,328
Number of Sequences: 33410
Number of Extensions: 5007806328
Number of Successful Extensions: 264383962
Number of sequences better than 0.0: 0
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