BLASTX 7.6.2
Query= RU33683 /QuerySize=201
(200 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G10200.1 | Symbols: WLIM1 | WLIM1; transcripti... 114 1e-026
TAIR9_protein||AT2G39900.1 | Symbols: | LIM domain-containing p... 79 4e-016
TAIR9_protein||AT3G55770.1 | Symbols: | LIM domain-containing p... 79 6e-016
TAIR9_protein||AT3G55770.2 | Symbols: | LIM domain-containing p... 79 6e-016
TAIR9_protein||AT3G55770.3 | Symbols: | LIM domain-containing p... 79 6e-016
TAIR9_protein||AT3G55770.4 | Symbols: | LIM domain-containing p... 79 6e-016
TAIR9_protein||AT3G55770.5 | Symbols: | LIM domain-containing p... 79 6e-016
TAIR9_protein||AT1G01780.1 | Symbols: | LIM domain-containing p... 67 3e-012
TAIR9_protein||AT3G61230.1 | Symbols: | LIM domain-containing p... 62 8e-011
TAIR9_protein||AT2G45800.1 | Symbols: | LIM domain-containing p... 58 9e-010
TAIR9_protein||AT2G45800.2 | Symbols: | LIM domain-containing p... 58 9e-010
TAIR9_protein||AT3G55770.6 | Symbols: | LIM domain-containing p... 54 2e-008
>TAIR9_protein||AT1G10200.1 | Symbols: WLIM1 | WLIM1; transcription factor/ zinc
ion binding | chr1:3346677-3347763 REVERSE
Length = 191
Score = 114 bits (284), Expect = 1e-026
Identities = 51/61 (83%), Positives = 55/61 (90%), Gaps = 2/61 (3%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGGGDH--DEKVVG 26
YHK CFKCTHGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEGGG++ +KVV
Sbjct: 130 YHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGENAAKDKVVA 189
Query: 25 A 23
A
Sbjct: 190 A 190
>TAIR9_protein||AT2G39900.1 | Symbols: | LIM domain-containing protein |
chr2:16659136-16660267 FORWARD
Length = 201
Score = 79 bits (194), Expect = 4e-016
Identities = 36/66 (54%), Positives = 40/66 (60%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGGGDHDEKVVGAT 20
YHK CFKC+HGGC ISPSNY A EG LYCKHH QL KEKG+ + L AT
Sbjct: 129 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRATAAAT 188
Query: 19 EIAPEI 2
A +
Sbjct: 189 AAAAAV 194
Score = 53 bits (125), Expect = 4e-008
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKC+H + SNY + EG +YC+ H QL KE G+ S+
Sbjct: 30 YHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSK 74
>TAIR9_protein||AT3G55770.1 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 79 bits (192), Expect = 6e-016
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CFKC+HGGC ISPSNY A EG LYCKHH QL KEKG+ + L
Sbjct: 128 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173
Score = 54 bits (127), Expect = 2e-008
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKCTH + S+Y + EG LYCK H QL KE G+ ++
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNK 74
>TAIR9_protein||AT3G55770.2 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 79 bits (192), Expect = 6e-016
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CFKC+HGGC ISPSNY A EG LYCKHH QL KEKG+ + L
Sbjct: 128 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173
Score = 54 bits (127), Expect = 2e-008
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKCTH + S+Y + EG LYCK H QL KE G+ ++
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNK 74
>TAIR9_protein||AT3G55770.3 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 79 bits (192), Expect = 6e-016
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CFKC+HGGC ISPSNY A EG LYCKHH QL KEKG+ + L
Sbjct: 128 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173
Score = 54 bits (127), Expect = 2e-008
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKCTH + S+Y + EG LYCK H QL KE G+ ++
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNK 74
>TAIR9_protein||AT3G55770.4 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 79 bits (192), Expect = 6e-016
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CFKC+HGGC ISPSNY A EG LYCKHH QL KEKG+ + L
Sbjct: 128 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173
Score = 54 bits (127), Expect = 2e-008
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKCTH + S+Y + EG LYCK H QL KE G+ ++
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNK 74
>TAIR9_protein||AT3G55770.5 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 79 bits (192), Expect = 6e-016
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CFKC+HGGC ISPSNY A EG LYCKHH QL KEKG+ + L
Sbjct: 128 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173
Score = 54 bits (127), Expect = 2e-008
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKCTH + S+Y + EG LYCK H QL KE G+ ++
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNK 74
>TAIR9_protein||AT1G01780.1 | Symbols: | LIM domain-containing protein |
chr1:282919-284082 FORWARD
Length = 206
Score = 67 bits (161), Expect = 3e-012
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGGGDHDEKVVGAT 20
+HK CF+C HGGCT++ S+Y + + LYC+HH QL EKGN + + +H G T
Sbjct: 124 FHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASGNT 183
Query: 19 EIAPE 5
+ PE
Sbjct: 184 -LPPE 187
Score = 58 bits (139), Expect = 9e-010
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CF+CTH T+ SNY + +G LYCK H QL KE GN S+
Sbjct: 30 YHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLFKESGNFSK 74
>TAIR9_protein||AT3G61230.1 | Symbols: | LIM domain-containing protein |
chr3:22664601-22665503 REVERSE
Length = 214
Score = 62 bits (148), Expect = 8e-011
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ-LEGGGDHDEKVVGA 23
YHK CF+C H GC ++ S+Y A +G LYCK H +QL EKGN + L+ +H
Sbjct: 127 YHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRSTAEE 186
Query: 22 TEIAPE 5
+ P+
Sbjct: 187 DKTEPK 192
Score = 55 bits (130), Expect = 1e-008
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGGGDHDEKVVGAT 20
YHK CF+C+H T+ NY + +G LYCK H QL KE GN S+ EK AT
Sbjct: 31 YHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLFKESGNFSKNFQTAGKTEKSNDAT 90
Query: 19 E 17
+
Sbjct: 91 K 91
>TAIR9_protein||AT2G45800.1 | Symbols: | LIM domain-containing protein |
chr2:18858153-18859007 REVERSE
Length = 227
Score = 58 bits (139), Expect = 9e-010
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CF+CTH GC ++ S+Y + G LYCK H QL EKG+ + +
Sbjct: 126 YHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171
Score = 57 bits (135), Expect = 3e-009
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CF+CTH T+ SNY + +G LYCK H QL KE GN S+
Sbjct: 30 YHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLFKESGNYSK 74
>TAIR9_protein||AT2G45800.2 | Symbols: | LIM domain-containing protein |
chr2:18858153-18858823 REVERSE
Length = 196
Score = 58 bits (139), Expect = 9e-010
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 62
YHK CF+CTH GC ++ S+Y + G LYCK H QL EKG+ + +
Sbjct: 95 YHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 140
>TAIR9_protein||AT3G55770.6 | Symbols: | LIM domain-containing protein |
chr3:20703799-20704614 FORWARD
Length = 128
Score = 54 bits (127), Expect = 2e-008
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = -2
Query: 199 YHKMCFKCTHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQ 65
YHK CFKCTH + S+Y + EG LYCK H QL KE G+ ++
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNK 74
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,123,143,051
Number of Sequences: 33410
Number of Extensions: 5123143051
Number of Successful Extensions: 274612372
Number of sequences better than 0.0: 0
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