BLASTX 7.6.2
Query= RU37683 /QuerySize=226
(225 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G27650.1 | Symbols: ATU2AF35A | ATU2AF35A; RNA... 122 7e-029
TAIR9_protein||AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | U2AF3... 122 7e-029
TAIR9_protein||AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | U2AF3... 122 7e-029
TAIR9_protein||AT3G44785.1 | Symbols: | U2AF splicing factor su... 101 2e-022
TAIR9_protein||AT1G10320.1 | Symbols: | U2 snRNP auxiliary fact... 66 4e-012
>TAIR9_protein||AT1G27650.1 | Symbols: ATU2AF35A | ATU2AF35A; RNA binding /
nucleic acid binding / nucleotide binding / zinc ion binding |
chr1:9615152-9616042 FORWARD
Length = 297
Score = 122 bits (304), Expect = 7e-029
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = -2
Query: 188 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPVLL 15
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRP ++
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMI 58
>TAIR9_protein||AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | U2AF35B; RNA binding
/ nucleic acid binding / nucleotide binding / zinc ion binding |
chr5:17170445-17171296 REVERSE
Length = 284
Score = 122 bits (304), Expect = 7e-029
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = -2
Query: 188 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPVLL 15
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRP ++
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMI 58
>TAIR9_protein||AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | U2AF35B; RNA binding
/ nucleic acid binding / nucleotide binding / zinc ion binding |
chr5:17170445-17171296 REVERSE
Length = 284
Score = 122 bits (304), Expect = 7e-029
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = -2
Query: 188 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPVLL 15
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRP ++
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMI 58
>TAIR9_protein||AT3G44785.1 | Symbols: | U2AF splicing factor subunit, putative
/ U2 auxiliary factor 38 kDa subunit, putative | chr3:16328221-16328448
REVERSE
Length = 76
Score = 101 bits (249), Expect = 2e-022
Identities = 44/54 (81%), Positives = 50/54 (92%)
Frame = -2
Query: 188 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQR 27
M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+ +P+ISPTLLLSN YQ+
Sbjct: 1 MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQ 54
>TAIR9_protein||AT1G10320.1 | Symbols: | U2 snRNP auxiliary factor-related |
chr1:3384164-3388373 REVERSE
Length = 758
Score = 66 bits (159), Expect = 4e-012
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = -2
Query: 164 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRP 24
FGTE+D+ +CPF+ K GACR G RCSR+H P S TLL+ NMY P
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGP 283
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,440,711,220
Number of Sequences: 33410
Number of Extensions: 5440711220
Number of Successful Extensions: 287226300
Number of sequences better than 0.0: 0
|