BLASTX 7.6.2
Query= RU41955 /QuerySize=238
(237 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G39100.1 | Symbols: SHL1 | SHL1 (short life); ... 146 2e-036
TAIR9_protein||AT4G22140.1 | Symbols: | DNA binding / protein b... 141 1e-034
TAIR9_protein||AT4G22140.2 | Symbols: | DNA binding / protein b... 141 1e-034
TAIR9_protein||AT4G04260.1 | Symbols: | bromo-adjacent homology... 93 3e-020
>TAIR9_protein||AT4G39100.1 | Symbols: SHL1 | SHL1 (short life); transcription
factor/ zinc-mediated transcriptional activator |
chr4:18218298-18220134 REVERSE
Length = 229
Score = 146 bits (368), Expect = 2e-036
Identities = 60/79 (75%), Positives = 71/79 (89%)
Frame = +1
Query: 1 KCTVHTFRGYSKLDAVGNDDFFCRFEYNSTTGSFNPDRVAVYCKCEMPYNPDDLMVQCEG 180
KC VH+F Y+KLD+VGNDDFFCRFEYNSTTG+F+PDRV V+CKCEMPYNPDDLMVQCE
Sbjct: 100 KCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEE 159
Query: 181 CSDWFHPACIDMSAEEAER 237
CS+WFHP+CI + EEA++
Sbjct: 160 CSEWFHPSCIGTTIEEAKK 178
>TAIR9_protein||AT4G22140.1 | Symbols: | DNA binding / protein binding / zinc
ion binding | chr4:11728556-11730230 REVERSE
Length = 235
Score = 141 bits (353), Expect = 1e-034
Identities = 55/79 (69%), Positives = 69/79 (87%)
Frame = +1
Query: 1 KCTVHTFRGYSKLDAVGNDDFFCRFEYNSTTGSFNPDRVAVYCKCEMPYNPDDLMVQCEG 180
KC VHTF+ Y++L+ VG +D++CRFEY + TG+F PDRVAVYCKCEMPYNPDDLMVQCEG
Sbjct: 107 KCIVHTFKNYTRLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEG 166
Query: 181 CSDWFHPACIDMSAEEAER 237
C DW+HPAC+ M+ EEA++
Sbjct: 167 CKDWYHPACVGMTIEEAKK 185
>TAIR9_protein||AT4G22140.2 | Symbols: | DNA binding / protein binding / zinc
ion binding | chr4:11728093-11730230 REVERSE
Length = 225
Score = 141 bits (353), Expect = 1e-034
Identities = 55/79 (69%), Positives = 69/79 (87%)
Frame = +1
Query: 1 KCTVHTFRGYSKLDAVGNDDFFCRFEYNSTTGSFNPDRVAVYCKCEMPYNPDDLMVQCEG 180
KC VHTF+ Y++L+ VG +D++CRFEY + TG+F PDRVAVYCKCEMPYNPDDLMVQCEG
Sbjct: 107 KCIVHTFKNYTRLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEG 166
Query: 181 CSDWFHPACIDMSAEEAER 237
C DW+HPAC+ M+ EEA++
Sbjct: 167 CKDWYHPACVGMTIEEAKK 185
>TAIR9_protein||AT4G04260.1 | Symbols: | bromo-adjacent homology (BAH)
domain-containing protein | chr4:2054636-2055849 FORWARD
Length = 194
Score = 93 bits (229), Expect = 3e-020
Identities = 41/79 (51%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 KCTVHTFRGYSKLDAVGNDDFFCRFEYNSTTGSFNPDRVAVYCKCEMPYNPDDLMVQCEG 180
KC VHTF+ Y++L+ VG +D++C F+Y + TG+F PDRVAVY KCEMPYN D+LM +
Sbjct: 69 KCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSDELM-ELLL 127
Query: 181 CSDWFHPACIDMSAEEAER 237
C H AC+ ++ EEA++
Sbjct: 128 CHYRVHLACVGVTIEEAKK 146
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,802,862,040
Number of Sequences: 33410
Number of Extensions: 5802862040
Number of Successful Extensions: 312512627
Number of sequences better than 0.0: 0
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