BLASTX 7.6.2
Query= RU43323 /QuerySize=291
(290 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G33420.1 | Symbols: | PHD finger family prote... 121 1e-028
TAIR9_protein||AT1G66170.1 | Symbols: MMD1 | MMD1 (MALE MEIOCYTE... 87 1e-018
TAIR9_protein||AT2G01810.1 | Symbols: | PHD finger family prote... 78 8e-016
TAIR9_protein||AT5G22260.1 | Symbols: MS1 | MS1 (male sterility ... 69 5e-013
TAIR9_protein||AT1G32810.2 | Symbols: | protein binding / zinc ... 64 1e-011
TAIR9_protein||AT4G10600.1 | Symbols: | PHD finger family prote... 64 2e-011
>TAIR9_protein||AT1G33420.1 | Symbols: | PHD finger family protein |
chr1:12121063-12123346 REVERSE
Length = 698
Score = 121 bits (302), Expect = 1e-028
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Frame = +1
Query: 1 HGLNRFRMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVC 180
HGL R+RMERG+++W VDC CGTKDDDGERMLACD CGVW HTRC GI+ +D +P+KF+C
Sbjct: 588 HGLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLC 647
Query: 181 LRCMSSYREKNQSTCDSAKEANCVPLTNTTCRSKAA 288
RC+ Y +K + + + ++ VP CR ++A
Sbjct: 648 FRCIELYSKKPKQS-KKERGSSQVPKAGFVCRGESA 682
>TAIR9_protein||AT1G66170.1 | Symbols: MMD1 | MMD1 (MALE MEIOCYTE DEATH 1); DNA
binding / protein binding / zinc ion binding | chr1:24638793-24641222
REVERSE
Length = 705
Score = 87 bits (215), Expect = 1e-018
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +1
Query: 10 NRFRMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRC 189
++ + + G ++W+V CIC +DDDGERM++CD C VWQHTRC GI SD +P FVC C
Sbjct: 594 SKLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCSNC 653
Query: 190 MSSYREKNQ 216
+ E+ +
Sbjct: 654 CEEFAEQQR 662
>TAIR9_protein||AT2G01810.1 | Symbols: | PHD finger family protein |
chr2:347537-349952 FORWARD
Length = 698
Score = 78 bits (191), Expect = 8e-016
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +1
Query: 19 RMERGIESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRCM-S 195
R E G + W VDC CG +DDDGERM+ACD C VW HT C I + +P+ F+C C
Sbjct: 626 RYEGGFDDWTVDCKCGARDDDGERMVACDACKVWHHTLCNSIEDDEAVPSVFLCNMCYGD 685
Query: 196 SYREKNQS 219
S R K ++
Sbjct: 686 SLRSKKRN 693
>TAIR9_protein||AT5G22260.1 | Symbols: MS1 | MS1 (male sterility 1); DNA binding
/ transcription factor | chr5:7367707-7370192 REVERSE
Length = 673
Score = 69 bits (167), Expect = 5e-013
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +1
Query: 49 VDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRC 189
++C CG ++DGERM+ CD C VWQHTRC G+ ++E+P F+C C
Sbjct: 615 IECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSC 661
>TAIR9_protein||AT1G32810.2 | Symbols: | protein binding / zinc ion binding |
chr1:11881810-11885843 FORWARD
Length = 1069
Score = 64 bits (155), Expect = 1e-011
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 43 WIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRCMS 195
W VDC+CG DDDG M+ CD CGVW HTRC+ E+ F C +C S
Sbjct: 22 WTVDCVCGVNDDDGTEMVKCDDCGVWVHTRCSRFVEGQEL---FTCHKCKS 69
>TAIR9_protein||AT4G10600.1 | Symbols: | PHD finger family protein |
chr4:6547934-6548647 REVERSE
Length = 238
Score = 64 bits (154), Expect = 2e-011
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 37 ESWIVDCICGTKDDDGERMLACDTCGVWQHTRCAGIHCSDEIPAKFVCLRCMSSYREKNQ 216
ESW VDC+CG DDG+ M+ CD CGVW HT C+ D++ FVC +C E
Sbjct: 10 ESWTVDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDL---FVCHKCKIKNNEDEL 66
Query: 217 STCDSAK 237
S K
Sbjct: 67 SKLSVTK 73
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,917,719,227
Number of Sequences: 33410
Number of Extensions: 5917719227
Number of Successful Extensions: 322562582
Number of sequences better than 0.0: 0
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