BLASTX 7.6.2
Query= RU43914 /QuerySize=296
(295 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G14400.1 | Symbols: UBC1, ATUBC1 | UBC1 (UBIQU... 153 3e-038
TAIR9_protein||AT1G14400.2 | Symbols: UBC1, ATUBC1 | UBC1 (UBIQU... 153 3e-038
TAIR9_protein||AT2G02760.1 | Symbols: ATUBC2, UBC2 | ATUBC2 (UBI... 153 3e-038
TAIR9_protein||AT5G62540.1 | Symbols: UBC3 | UBC3 (ubiquitin-con... 136 4e-033
TAIR9_protein||AT3G57870.1 | Symbols: AHUS5, EMB1637, SCE1, SCE1... 60 3e-010
TAIR9_protein||AT3G46460.1 | Symbols: UBC13 | UBC13 (ubiquitin-c... 55 5e-009
TAIR9_protein||AT3G55380.1 | Symbols: UBC14 | UBC14 (ubiquitin-c... 55 9e-009
TAIR9_protein||AT5G59300.1 | Symbols: UBC7, ATUBC7 | UBC7 (UBIQU... 50 2e-007
>TAIR9_protein||AT1G14400.1 | Symbols: UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER
PROTEIN 1); ubiquitin-protein ligase | chr1:4927294-4928136 REVERSE
Length = 153
Score = 153 bits (384), Expect = 3e-038
Identities = 73/87 (83%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Frame = -1
Query: 262 MSTPARKRLIRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFS 83
MSTPARKRL+RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQFS
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 82 EDYPNKPPTVTTLVYYEISLTIPNIYA 2
EDYPNKPPTV + + PNIYA
Sbjct: 61 EDYPNKPPTVR----FVSRMFHPNIYA 83
>TAIR9_protein||AT1G14400.2 | Symbols: UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER
PROTEIN 1); ubiquitin-protein ligase | chr1:4927294-4928136 REVERSE
Length = 153
Score = 153 bits (384), Expect = 3e-038
Identities = 73/87 (83%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Frame = -1
Query: 262 MSTPARKRLIRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFS 83
MSTPARKRL+RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQFS
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 82 EDYPNKPPTVTTLVYYEISLTIPNIYA 2
EDYPNKPPTV + + PNIYA
Sbjct: 61 EDYPNKPPTVR----FVSRMFHPNIYA 83
>TAIR9_protein||AT2G02760.1 | Symbols: ATUBC2, UBC2 | ATUBC2
(UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase |
chr2:774271-775149 FORWARD
Length = 153
Score = 153 bits (384), Expect = 3e-038
Identities = 73/87 (83%), Positives = 77/87 (88%), Gaps = 4/87 (4%)
Frame = -1
Query: 262 MSTPARKRLIRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFS 83
MSTPARKRL+RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQFS
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 82 EDYPNKPPTVTTLVYYEISLTIPNIYA 2
EDYPNKPPTV + + PNIYA
Sbjct: 61 EDYPNKPPTVR----FVSRMFHPNIYA 83
>TAIR9_protein||AT5G62540.1 | Symbols: UBC3 | UBC3 (ubiquitin-conjugating enzyme
3); ubiquitin-protein ligase | chr5:25104679-25105465 FORWARD
Length = 151
Score = 136 bits (340), Expect = 4e-033
Identities = 63/87 (72%), Positives = 73/87 (83%), Gaps = 4/87 (4%)
Frame = -1
Query: 262 MSTPARKRLIRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFS 83
M+TPA+KRL+ DFKRLQ+DPP GISGAPQDNNIM WNA+IFGP+DTPWDGGTFKLTL F+
Sbjct: 1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFT 60
Query: 82 EDYPNKPPTVTTLVYYEISLTIPNIYA 2
EDYPNKPP +V + + PNIYA
Sbjct: 61 EDYPNKPP----IVRFVSRMFHPNIYA 83
>TAIR9_protein||AT3G57870.1 | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 |
SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase | chr3:21428831-21430110
REVERSE
Length = 161
Score = 60 bits (143), Expect = 3e-010
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = -1
Query: 250 ARKRLIRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQF 86
AR RL + K +++ P G P+ N+M+W+ I G T W+GG F LT+ F
Sbjct: 6 ARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLTMHF 65
Query: 85 SEDYPNKPP 59
SEDYP+KPP
Sbjct: 66 SEDYPSKPP 74
>TAIR9_protein||AT3G46460.1 | Symbols: UBC13 | UBC13 (ubiquitin-conjugating
enzyme 13); ubiquitin-protein ligase | chr3:17096120-17097315 REVERSE
Length = 167
Score = 55 bits (132), Expect = 5e-009
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = -1
Query: 262 MSTPARKRLIRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQF 86
M++ A L + K L + P G S G + NI W+ I GP DT ++GG F + F
Sbjct: 1 MNSQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSF 60
Query: 85 SEDYPNKPPTVTTLVYYEISLTIPNIY 5
++YPN PPTV + + PN+Y
Sbjct: 61 PQNYPNSPPTVR----FTSDIWHPNVY 83
>TAIR9_protein||AT3G55380.1 | Symbols: UBC14 | UBC14 (ubiquitin-conjugating
enzyme 14); ubiquitin-protein ligase | chr3:20531520-20532895 FORWARD
Length = 168
Score = 55 bits (130), Expect = 9e-009
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = -1
Query: 238 LIRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKP 62
L + K L + P G S G + N+ W+ I GP DT ++GG F + F E+YP P
Sbjct: 10 LQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSP 69
Query: 61 PTVTTLVYYEISLTIPNIYA 2
PTVT + + PN+Y+
Sbjct: 70 PTVT----FTSEMWHPNVYS 85
>TAIR9_protein||AT5G59300.1 | Symbols: UBC7, ATUBC7 | UBC7 (UBIQUITIN CARRIER
PROTEIN 7); protein binding / ubiquitin-protein ligase |
chr5:23919868-23921291 REVERSE
Length = 199
Score = 50 bits (119), Expect = 2e-007
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Frame = -1
Query: 253 PARKRLIRDFKRLQQDPPAGISGAPQDN------NIMLWNAVIFGPDDTPWDGGTFKLTL 92
P ++L F+ + P +S P N NI W+ I GP DT ++GG F +
Sbjct: 33 PWLRKLAFSFRNNSKASPWNLS--PYQNQSCDCYNIFEWSVTIIGPPDTLYEGGFFNAIM 90
Query: 91 QFSEDYPNKPPTVTTLVYYEISLTIPNIYA 2
F ++YPN PPTV + + PN+Y+
Sbjct: 91 TFPQNYPNSPPTVR----FTSDMWHPNVYS 116
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
|