BLASTX 7.6.2
Query= RU44294 /QuerySize=297
(296 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G34620.1 | Symbols: | mitochondrial transcrip... 86 4e-018
TAIR9_protein||AT2G36000.1 | Symbols: | mitochondrial transcrip... 72 6e-014
TAIR9_protein||AT2G36000.2 | Symbols: | mitochondrial transcrip... 72 6e-014
TAIR9_protein||AT3G18870.1 | Symbols: | mitochondrial transcrip... 67 2e-012
TAIR9_protein||AT2G03050.1 | Symbols: | mitochondrial transcrip... 64 2e-011
TAIR9_protein||AT4G02990.1 | Symbols: | mitochondrial transcrip... 52 8e-008
TAIR9_protein||AT2G44020.1 | Symbols: | mitochondrial transcrip... 49 5e-007
TAIR9_protein||AT4G14605.1 | Symbols: | FUNCTIONS IN: molecular... 47 1e-006
>TAIR9_protein||AT2G34620.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:14577196-14578203
FORWARD
Length = 304
Score = 86 bits (211), Expect = 4e-018
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = +1
Query: 1 ENNYKPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLMLKA 177
ENN+KPK +YF ++ KLE+LKEFPQYFAFSLEKRIKPRH+E ++ G+ +PL LMLK+
Sbjct: 227 ENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKS 285
>TAIR9_protein||AT2G36000.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:15117181-15118182
FORWARD
Length = 334
Score = 72 bits (175), Expect = 6e-014
Identities = 32/56 (57%), Positives = 40/56 (71%)
Frame = +1
Query: 7 NYKPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLMLK 174
NY+PK +Y V+MG + ++ EFPQYF+FSLE RIKPRH GV PLP+MLK
Sbjct: 246 NYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLK 301
>TAIR9_protein||AT2G36000.2 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:15117181-15118333
FORWARD
Length = 319
Score = 72 bits (175), Expect = 6e-014
Identities = 32/56 (57%), Positives = 40/56 (71%)
Frame = +1
Query: 7 NYKPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLMLK 174
NY+PK +Y V+MG + ++ EFPQYF+FSLE RIKPRH GV PLP+MLK
Sbjct: 246 NYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLK 301
>TAIR9_protein||AT3G18870.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr3:6508515-6509339
REVERSE
Length = 275
Score = 67 bits (161), Expect = 2e-012
Identities = 31/57 (54%), Positives = 41/57 (71%)
Frame = +1
Query: 1 ENNYKPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLML 171
E+N +PK+E+ DM +LE+LK+FPQYFAFSL KRI+PRH + + V V L ML
Sbjct: 205 EDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRML 261
>TAIR9_protein||AT2G03050.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:900094-900945
REVERSE
Length = 284
Score = 64 bits (153), Expect = 2e-011
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +1
Query: 1 ENNYKPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLMLK 174
+NN PK E+F +M +++LK FPQYF+FSLE++IKPRH + + G+ +PL MLK
Sbjct: 205 DNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLK 262
>TAIR9_protein||AT4G02990.1 | Symbols: | mitochondrial transcription
termination factor family protein / mTERF family protein |
chr4:1322158-1323783 FORWARD
Length = 542
Score = 52 bits (122), Expect = 8e-008
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 13 KPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLML 171
K +EYF +M L+DL +FP +F + LE +KPRH ++++ G+ L ML
Sbjct: 431 KLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWML 483
>TAIR9_protein||AT2G44020.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:18217737-18219260
REVERSE
Length = 508
Score = 49 bits (115), Expect = 5e-007
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 13 KPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPL 159
K Y ++ +MG +++L E+P+YF +SLE RIKPR+ ++ G+ L
Sbjct: 396 KNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSL 444
>TAIR9_protein||AT4G14605.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Mitochodrial transcription termination factor-related
(InterPro:IPR003690); BEST Arabidopsis thaliana protein match is:
EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 760 Blast hits
to 374 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 99;
Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 37 (source:
NCBI BLink). | chr4:8378815-8380564 FORWARD
Length = 494
Score = 47 bits (111), Expect = 1e-006
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +1
Query: 1 ENNYKPKYEYFSVDMGLKLEDLKEFPQYFAFSLEKRIKPRHMEVVQSGVHVPLPLML 171
+ N PK++YF M +L +FPQ+F +SL++RIKPR+ V +SGV + L +L
Sbjct: 405 KENVMPKWDYFQT-MDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVL 460
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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