BLASTX 7.6.2
Query= RU44303 /QuerySize=754
(753 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G42740.1 | Symbols: RPL16A | RPL16A; structura... 297 5e-081
TAIR9_protein||AT3G58700.1 | Symbols: | 60S ribosomal protein L... 297 5e-081
TAIR9_protein||AT4G18730.1 | Symbols: RPL16B | RPL16B; structura... 297 5e-081
TAIR9_protein||AT5G45775.2 | Symbols: | 60S ribosomal protein L... 297 5e-081
TAIR9_protein||AT5G45775.1 | Symbols: | 60S ribosomal protein L... 280 1e-075
TAIR9_protein||AT4G01310.1 | Symbols: | ribosomal protein L5 fa... 51 6e-007
>TAIR9_protein||AT2G42740.1 | Symbols: RPL16A | RPL16A; structural constituent
of ribosome | chr2:17791794-17792946 FORWARD
Length = 183
Score = 297 bits (760), Expect = 5e-081
Identities = 150/180 (83%), Positives = 158/180 (87%)
Frame = +1
Query: 76 MASEKKLANPMREIKVQKLVPNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 255
MASEKKL+NPMR+IKVQKLV NISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 256 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 435
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 436 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILTSPKHL 615
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVIL +++
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT3G58700.1 | Symbols: | 60S ribosomal protein L11 (RPL11B) |
chr3:21711661-21712816 FORWARD
Length = 183
Score = 297 bits (760), Expect = 5e-081
Identities = 150/180 (83%), Positives = 158/180 (87%)
Frame = +1
Query: 76 MASEKKLANPMREIKVQKLVPNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 255
MASEKKL+NPMR+IKVQKLV NISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 256 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 435
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 436 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILTSPKHL 615
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVIL +++
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT4G18730.1 | Symbols: RPL16B | RPL16B; structural constituent
of ribosome | chr4:10302238-10303206 FORWARD
Length = 183
Score = 297 bits (760), Expect = 5e-081
Identities = 150/180 (83%), Positives = 158/180 (87%)
Frame = +1
Query: 76 MASEKKLANPMREIKVQKLVPNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 255
MASEKKL+NPMR+IKVQKLV NISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 256 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 435
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 436 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILTSPKHL 615
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVIL +++
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT5G45775.2 | Symbols: | 60S ribosomal protein L11 (RPL11D) |
chr5:18565281-18566496 REVERSE
Length = 183
Score = 297 bits (760), Expect = 5e-081
Identities = 150/180 (83%), Positives = 158/180 (87%)
Frame = +1
Query: 76 MASEKKLANPMREIKVQKLVPNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFG 255
MASEKKL+NPMR+IKVQKLV NISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFG
Sbjct: 1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFG 60
Query: 256 IRRNEKIACYVTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDP 435
IRRNEKIACYVTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDP
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDP 120
Query: 436 STGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILTSPKHL 615
STGIYGMDFYVVLE IQHRVTKDDAMKWFQVKYEGVIL +++
Sbjct: 121 STGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180
>TAIR9_protein||AT5G45775.1 | Symbols: | 60S ribosomal protein L11 (RPL11D) |
chr5:18565281-18566377 REVERSE
Length = 173
Score = 280 bits (714), Expect = 1e-075
Identities = 141/170 (82%), Positives = 148/170 (87%)
Frame = +1
Query: 106 MREIKVQKLVPNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 285
MR+IKVQKLV NISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 286 VTVRGDKAMSLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 465
VTVRG+KAM LLESGLKVKEYELLR+NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 466 VVLEXXXXXXXXXXXXXXXXXIQHRVTKDDAMKWFQVKYEGVILTSPKHL 615
VVLE IQHRVTKDDAMKWFQVKYEGVIL +++
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 170
>TAIR9_protein||AT4G01310.1 | Symbols: | ribosomal protein L5 family protein |
chr4:544166-545480 REVERSE
Length = 263
Score = 51 bits (121), Expect = 6e-007
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 73 AMASEKKLANPMREIKVQKLVPNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTV 243
A+ E K N + KVQK+V N +G++ L A K + ++GQ P+ ++AR ++
Sbjct: 70 ALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASI 129
Query: 244 RSFGIRRNEKIACYVTVRGDKAMSLLE 324
+F IR ++ + VT+RGD S L+
Sbjct: 130 ATFKIREDQPLGIAVTLRGDVMYSFLD 156
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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