BLASTX 7.6.2
Query= RU44366 /QuerySize=804
(803 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G10170.1 | Symbols: | synaptobrevin-related f... 141 8e-034
TAIR9_protein||AT4G10170.2 | Symbols: | synaptobrevin-related f... 141 8e-034
TAIR9_protein||AT1G33475.1 | Symbols: | INVOLVED IN: transport,... 129 2e-030
TAIR9_protein||AT4G27840.1 | Symbols: | FUNCTIONS IN: molecular... 59 4e-009
>TAIR9_protein||AT4G10170.1 | Symbols: | synaptobrevin-related family protein |
chr4:6344587-6345351 FORWARD
Length = 255
Score = 141 bits (353), Expect = 8e-034
Identities = 64/106 (60%), Positives = 81/106 (76%)
Frame = +2
Query: 482 MDSIQTTVYYCCVSKSNRILYAYSGGDHEIENLATLCLEKAPPFHKWYIETSGKRTYGFL 661
M I+ TV+YCCVS+ N+ILY+Y+GGD E+LA LCLEK+PPFH WY ET GKR +GFL
Sbjct: 1 MGLIKNTVHYCCVSRDNQILYSYNGGDQTNESLAALCLEKSPPFHTWYFETIGKRRFGFL 60
Query: 662 IEDGYVYLTIVDESLGTPGVLQFLDHLRDE.QNIAQKGSRGSLSSM 799
I DG+VY IVDE L VL+FL+HLRDE + A++ SRGS ++M
Sbjct: 61 IGDGFVYFAIVDEVLKRSSVLKFLEHLRDEFKKAARENSRGSFTAM 106
>TAIR9_protein||AT4G10170.2 | Symbols: | synaptobrevin-related family protein |
chr4:6344587-6345351 FORWARD
Length = 255
Score = 141 bits (353), Expect = 8e-034
Identities = 64/106 (60%), Positives = 81/106 (76%)
Frame = +2
Query: 482 MDSIQTTVYYCCVSKSNRILYAYSGGDHEIENLATLCLEKAPPFHKWYIETSGKRTYGFL 661
M I+ TV+YCCVS+ N+ILY+Y+GGD E+LA LCLEK+PPFH WY ET GKR +GFL
Sbjct: 1 MGLIKNTVHYCCVSRDNQILYSYNGGDQTNESLAALCLEKSPPFHTWYFETIGKRRFGFL 60
Query: 662 IEDGYVYLTIVDESLGTPGVLQFLDHLRDE.QNIAQKGSRGSLSSM 799
I DG+VY IVDE L VL+FL+HLRDE + A++ SRGS ++M
Sbjct: 61 IGDGFVYFAIVDEVLKRSSVLKFLEHLRDEFKKAARENSRGSFTAM 106
>TAIR9_protein||AT1G33475.1 | Symbols: | INVOLVED IN: transport,
vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED
IN: inflorescence meristem, male gametophyte, sepal, carpel, petiole;
EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin
(InterPro:IPR010908), Longin-like (InterPro:IPR011012); BEST
Arabidopsis thaliana protein match is: synaptobrevin-related family
protein (TAIR:AT4G10170.2); Has 148 Blast hits to 148 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:12147423-12148190 REVERSE
Length = 256
Score = 129 bits (323), Expect = 2e-030
Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Frame = +2
Query: 482 MDSIQTTVYYCCVSKSNRILYAY-SGGDH-EIENLATLCLEKAPPFHKWYIETSGKRTYG 655
M SIQ TV+YCCVS+ N+I+YAY + GDH E+LA LCLEK PPFHKWY ET GK+T+G
Sbjct: 1 MGSIQNTVHYCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFG 60
Query: 656 FLIEDGYVYLTIVDESLGTPGVLQFLDHLRDE.QNIAQKGSRGSLS 793
FL++D +VY IVD+ VL FL+ LRDE + +K SRGS S
Sbjct: 61 FLMKDDFVYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFS 106
>TAIR9_protein||AT4G27840.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST
Arabidopsis thaliana protein match is: vesicle-associated membrane
protein-related (TAIR:AT5G52990.1); Has 165 Blast hits to 165 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr4:13865268-13866050 REVERSE
Length = 261
Score = 59 bits (140), Expect = 4e-009
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +2
Query: 482 MDSIQTTVYYCCVSKSNRILYAYSGGDHE-IENLATLCLEKAPPFHKWYIETSGKRTYGF 658
M S Q ++Y C++K IL ++ + IE+LA C+E PP H T KRTY
Sbjct: 1 MTSNQRMLFYSCIAKGTVILAEFASKEEPGIEDLALRCIENVPPHHSMISHTVHKRTYAL 60
Query: 659 LIEDGYVYLTIVDESLGTPGVLQFLDHLRDE.QNIAQKGS 778
+I+ + Y I+DE + + + L+ +++ + GS
Sbjct: 61 IIDGLFSYFAILDEVVAKSESVWLFNRLKSATESLMEDGS 100
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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