BLASTX 7.6.2
Query= RU44368 /QuerySize=481
(480 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G31985.1 | Symbols: | 60S ribosomal protein L... 86 1e-017
TAIR9_protein||AT2G25210.1 | Symbols: | 60S ribosomal protein L... 81 3e-016
TAIR9_protein||AT3G02190.1 | Symbols: | 60S ribosomal protein L... 81 3e-016
>TAIR9_protein||AT4G31985.1 | Symbols: | 60S ribosomal protein L39 (RPL39C) |
chr4:15469931-15470366 FORWARD
Length = 52
Score = 86 bits (211), Expect = 1e-017
Identities = 38/52 (73%), Positives = 39/52 (75%)
Frame = +1
Query: 52 MPSHXXXXXXXXXXXXMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF* 207
MPSH MRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF*
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF* 52
>TAIR9_protein||AT2G25210.1 | Symbols: | 60S ribosomal protein L39 (RPL39A) |
chr2:10740157-10740379 FORWARD
Length = 45
Score = 81 bits (198), Expect = 3e-016
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 100 MRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF* 207
MRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF*
Sbjct: 10 MRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF* 45
>TAIR9_protein||AT3G02190.1 | Symbols: | 60S ribosomal protein L39 (RPL39B) |
chr3:406005-406342 REVERSE
Length = 52
Score = 81 bits (198), Expect = 3e-016
Identities = 36/52 (69%), Positives = 38/52 (73%)
Frame = +1
Query: 52 MPSHXXXXXXXXXXXXMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF* 207
MPSH MRQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLGF*
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF* 52
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
|