BLASTX 7.6.2
Query= RU44393 /QuerySize=390
(389 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 109 7e-025
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 109 7e-025
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 109 7e-025
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 105 1e-023
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 105 1e-023
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 105 1e-023
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 94 2e-020
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 94 2e-020
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 94 2e-020
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 89 9e-019
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 89 9e-019
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 89 9e-019
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 77 3e-015
TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcripti... 65 1e-011
TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HM... 62 7e-011
TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HM... 59 6e-010
TAIR9_protein||AT2G34450.2 | Symbols: | high mobility group (HM... 58 1e-009
TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HM... 56 5e-009
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 109 bits (271), Expect = 7e-025
Identities = 50/59 (84%), Positives = 55/59 (93%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKRP+SAFFVFME+FR YK++HP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 109 bits (271), Expect = 7e-025
Identities = 50/59 (84%), Positives = 55/59 (93%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKRP+SAFFVFME+FR YK++HP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 109 bits (271), Expect = 7e-025
Identities = 50/59 (84%), Positives = 55/59 (93%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKRP+SAFFVFME+FR YK++HP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 105 bits (261), Expect = 1e-023
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKRPASAFFVFME+FRE +KK++P NKSVA VGKA G+KWKSLSD+EKAPY AKA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 105 bits (261), Expect = 1e-023
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKRPASAFFVFME+FRE +KK++P NKSVA VGKA G+KWKSLSD+EKAPY AKA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 105 bits (261), Expect = 1e-023
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKRPASAFFVFME+FRE +KK++P NKSVA VGKA G+KWKSLSD+EKAPY AKA
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 94 bits (233), Expect = 2e-020
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKR SAFFVF+E+FR +KK++PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 94 bits (233), Expect = 2e-020
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKR SAFFVF+E+FR +KK++PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 94 bits (233), Expect = 2e-020
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPNKPKR SAFFVF+E+FR +KK++PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 89 bits (218), Expect = 9e-019
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPN+PKRP SAFFVF+E+FR+++ +PNNKSVA VGKA G +WK+++D +KAPY AKA
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 89 bits (218), Expect = 9e-019
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPN+PKRP SAFFVF+E+FR+++ +PNNKSVA VGKA G +WK+++D +KAPY AKA
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 89 bits (218), Expect = 9e-019
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPN+PKRP SAFFVF+E+FR+++ +PNNKSVA VGKA G +WK+++D +KAPY AKA
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 77 bits (188), Expect = 3e-015
Identities = 30/59 (50%), Positives = 49/59 (83%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DPN+PK+P S FFVF+++FR+++ +P+NKSV VG+A G+KWK++++ E+AP+ AK+
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKS 88
>TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcription factor |
chr5:7888712-7890111 REVERSE
Length = 242
Score = 65 bits (156), Expect = 1e-011
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 218 NKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
NKPKRP +AFF+FM +FR+ +K +H N K GGEKWKSL++ EK Y KA
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKA 168
>TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 152
Score = 62 bits (150), Expect = 7e-011
Identities = 24/51 (47%), Positives = 41/51 (80%)
Frame = +2
Query: 224 PKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPY 376
PK+PA+AFF F+++FR++Y++++P+ KS+ +GK GEKWK+++ EK Y
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKY 113
>TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:12390228-12392516 FORWARD
Length = 457
Score = 59 bits (142), Expect = 6e-010
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DP KPK P SAF V+ E R +++ NKSV V K GE+WK+LSD +KAPY+ A
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSDKKKAPYEKVA 306
Score = 55 bits (130), Expect = 1e-008
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHP--NNKSVAAVGKAGGEKWKSLSDAEKAPYQAK 385
DPNKPK+PAS++F+F ++ R+K ++ P NN +V A+ KWK LS+ EK Y K
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISL---KWKELSEEEKQVYNGK 431
Query: 386 A 388
A
Sbjct: 432 A 432
>TAIR9_protein||AT2G34450.2 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 153
Score = 58 bits (139), Expect = 1e-009
Identities = 24/52 (46%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Frame = +2
Query: 224 PKRPASAFFVFMEEFREKYKKDHPNNKSV-AAVGKAGGEKWKSLSDAEKAPY 376
PK+PA+AFF F+++FR++Y++++P+ KS+ +GK GEKWK+++ EK Y
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKY 114
>TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:6760898-6763272 REVERSE
Length = 447
Score = 56 bits (134), Expect = 5e-009
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKA 388
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK+LS+ +KAPY A
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMA 297
Score = 50 bits (117), Expect = 5e-007
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = +2
Query: 212 DPNKPKRPASAFFVFMEEFREKYKKDHP--NNKSVAAVGKAGGEKWKSLSDAEKAPYQAK 385
DPNKPK+P S++F+F ++ R+ ++HP NN +V A KW L + EK Y +K
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISL---KWMELGEEEKQVYNSK 424
Query: 386 A 388
A
Sbjct: 425 A 425
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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