BLASTX 7.6.2
Query= RU44437 /QuerySize=823
(822 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G15340.1 | Symbols: MBD10 | MBD10; DNA binding... 158 7e-039
TAIR9_protein||AT3G15790.1 | Symbols: MBD11, ATMBD11 | MBD11; DN... 143 2e-034
>TAIR9_protein||AT1G15340.1 | Symbols: MBD10 | MBD10; DNA binding / methyl-CpG
binding | chr1:5275895-5277474 REVERSE
Length = 385
Score = 158 bits (397), Expect = 7e-039
Identities = 84/206 (40%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Frame = +2
Query: 125 DEVVAVELPAPPAWKKKILPKKGVTPRKNDVTFISPTGEEINNKKQLEQYLKSHPGNPAL 304
DE+V++ELPAP +WKK PK+ TPRK ++ F++PTGEEI+++KQLEQYLK+HPGNP +
Sbjct: 5 DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64
Query: 305 SEFGWSTGETPRRSSRISEKVK-STPPPENEPPXXXXXXXXXXXDNKVETTDAEHGT--- 472
SEF W+TGETPRRSSRIS+KVK +TP P+ EP DNK E
Sbjct: 65 SEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKE 124
Query: 473 -----NDTEMKDAEVAEKKDGEAEKQVENGGKAPXXXXXXXXXXXXXXXXXPEDGKETQT 637
D + ++AE ++K+ E ++ K E GKE QT
Sbjct: 125 NMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAGKEGQT 184
Query: 638 DVMETQGGEKDEKSNSVASEEQPAEV 715
++ E EK+++ +E + AEV
Sbjct: 185 EIAE---AEKEKEGEKAEAENKEAEV 207
>TAIR9_protein||AT3G15790.1 | Symbols: MBD11, ATMBD11 | MBD11; DNA binding /
methyl-CpG binding | chr3:5343209-5344386 FORWARD
Length = 255
Score = 143 bits (359), Expect = 2e-034
Identities = 81/207 (39%), Positives = 111/207 (53%), Gaps = 10/207 (4%)
Frame = +2
Query: 125 DEVVAVELPAPPAWKKKILPKKGVTPRKNDVTFISPTGEEINNKKQLEQYLKSHPGNPAL 304
+EVV+VELPAP +WKK P K + +K +V F++PTGEEI+N+KQLEQYLKSHPGNPA+
Sbjct: 5 EEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAI 64
Query: 305 SEFGWSTGETPRRSSRISEKVKSTPPPENEPPXXXXXXXXXXXDNKVETTDAEHG----- 469
+EF W+T TPRRS+RISEK K+TP P+ EPP E +E G
Sbjct: 65 AEFDWTTSGTPRRSARISEKTKATPSPDKEPPKKRGRTKSPVSKKDAEGEKSEGGGEENS 124
Query: 470 -TNDTEMKDAE-VAEKK---DGEAEKQVENGGKAPXXXXXXXXXXXXXXXXXPEDGKETQ 634
DTEM E +AE + D + E A E KE
Sbjct: 125 HVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGESMKEKA 184
Query: 635 TDVMETQGGEKDEKSNSVASEEQPAEV 715
D ++ + E D++ ++ + E+ +V
Sbjct: 185 LDSVDDKSKETDKEKDTGSIEKNSVDV 211
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
|