BLASTX 7.6.2
Query= RU44457 /QuerySize=388
(387 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G19360.1 | Symbols: | LOCATED IN: endoplasmic... 60 5e-010
TAIR9_protein||AT1G75110.1 | Symbols: RRA2 | RRA2 (REDUCED RESID... 53 4e-008
>TAIR9_protein||AT1G19360.1 | Symbols: | LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST
Arabidopsis thaliana protein match is: RRA2 (REDUCED RESIDUAL ARABINOSE
2) (TAIR:AT1G75110.1); Has 165 Blast hits to 162 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
152; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). |
chr1:6690672-6692211 REVERSE
Length = 429
Score = 60 bits (143), Expect = 5e-010
Identities = 34/76 (44%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 158 LRGSRXXXXXXXXXXXXXXFAFLYPHGFFSNSDDPLIQNRRIGKSDLQSSSSQCEPPERI 337
LRGSR A L+P+GFF NS L + + KS Q SS CE PER+
Sbjct: 11 LRGSRIAIAILIGIFIGCVCAVLFPYGFF-NSSSSLKASEHLSKSSNQVGSSACESPERV 69
Query: 338 NMLRSDIGALSDKNAE 385
ML+SD LS+KNAE
Sbjct: 70 KMLKSDFVTLSEKNAE 85
>TAIR9_protein||AT1G75110.1 | Symbols: RRA2 | RRA2 (REDUCED RESIDUAL ARABINOSE
2) | chr1:28194348-28195885 REVERSE
Length = 429
Score = 53 bits (126), Expect = 4e-008
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 128 RRDKAAAQSSLRGSRXXXXXXXXXXXXXXFAFLYPHGFFSNSDDPLIQNRRIGKSDLQSS 307
RRD+ LRGSR + L+P+GFF++ + RI KS
Sbjct: 4 RRDRI---QQLRGSRIAIAIFVGILIGCVCSVLFPNGFFNSGSSLIANEERISKSTSTDG 60
Query: 308 SSQCEPPERINMLRSDIGALSDKNAE 385
+ CE ER+ ML+SD +S KNAE
Sbjct: 61 LASCESSERVKMLKSDFSIISVKNAE 86
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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