BLASTX 7.6.2
Query= RU44524 /QuerySize=406
(405 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G21190.1 | Symbols: | small nuclear ribonucle... 167 3e-042
TAIR9_protein||AT1G76860.1 | Symbols: | small nuclear ribonucle... 164 1e-041
>TAIR9_protein||AT1G21190.1 | Symbols: | small nuclear ribonucleoprotein,
putative / snRNP, putative / Sm protein, putative |
chr1:7419989-7420856 REVERSE
Length = 98
Score = 167 bits (421), Expect = 3e-042
Identities = 79/93 (84%), Positives = 89/93 (95%)
Frame = +3
Query: 90 DFPVKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDET 269
D V+EPLD+IRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++T++EIDDET
Sbjct: 6 DATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDET 65
Query: 270 YEEIVRTTKRTVPYLFVRGDGVILVSPPLRTA* 368
YEEIVRTTKRTVP+LFVRGDGVILVSPPLRT *
Sbjct: 66 YEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT* 98
>TAIR9_protein||AT1G76860.1 | Symbols: | small nuclear ribonucleoprotein,
putative / snRNP, putative / Sm protein, putative |
chr1:28854594-28855637 REVERSE
Length = 99
Score = 164 bits (415), Expect = 1e-041
Identities = 80/89 (89%), Positives = 87/89 (97%)
Frame = +3
Query: 99 VKEPLDMIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSVEIDDETYEE 278
V+EPLD+IRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +T+VEIDDETYEE
Sbjct: 9 VREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEE 68
Query: 279 IVRTTKRTVPYLFVRGDGVILVSPPLRTA 365
IVRTTKRT+ +LFVRGDGVILVSPPLRTA
Sbjct: 69 IVRTTKRTIEFLFVRGDGVILVSPPLRTA 97
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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