BLASTX 7.6.2
Query= RU60872 /QuerySize=299
(298 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G68290.1 | Symbols: ENDO 2 | ENDO 2 (endonucle... 116 3e-027
TAIR9_protein||AT4G21585.1 | Symbols: ENDO4 | ENDO4 (endonucleas... 86 3e-018
TAIR9_protein||AT1G11190.1 | Symbols: BFN1, ENDO1 | BFN1 (BIFUNC... 85 8e-018
TAIR9_protein||AT4G21590.1 | Symbols: ENDO3 | ENDO3 (endonucleas... 75 5e-015
TAIR9_protein||AT4G21590.2 | Symbols: ENDO3 | ENDO3 (endonucleas... 75 5e-015
>TAIR9_protein||AT1G68290.1 | Symbols: ENDO 2 | ENDO 2 (endonuclease 2); T/G
mismatch-specific endonuclease/ endonuclease/ nucleic acid binding /
single-stranded DNA specific endodeoxyribonuclease |
chr1:25596718-25598264 FORWARD
Length = 291
Score = 116 bits (290), Expect = 3e-027
Identities = 51/75 (68%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Frame = +1
Query: 73 PVIHGWGIEGHTTVCRIAQSRLSDAAADAVKQLLPKYAENDLGTVCIWADRVKFRYHWSS 252
P IHGWG EGH +C+IAQ+RL + AA AVK+LLP+ AE DL ++C+WADRVKFRYHWSS
Sbjct: 23 PNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSS 82
Query: 253 ALHYIDTPDNLCTYQ 297
LHYI+TPD C+YQ
Sbjct: 83 PLHYINTPD-ACSYQ 96
>TAIR9_protein||AT4G21585.1 | Symbols: ENDO4 | ENDO4 (endonuclease 4); T/G
mismatch-specific endonuclease/ endonuclease/ nucleic acid binding /
single-stranded DNA specific endodeoxyribonuclease |
chr4:11477988-11479953 FORWARD
Length = 300
Score = 86 bits (212), Expect = 3e-018
Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Frame = +1
Query: 88 WGIEGHTTVCRIAQSRLSDAAADAVKQLLPKYAENDLGTVCIWADRVK--FRYHWSSALH 261
WG EGH TVC+IA+S + AVK+LLPK A+ DL +VC W D +K +++ W+S LH
Sbjct: 25 WGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPLH 84
Query: 262 YIDTPDNLCTYQ 297
Y+DTPD C Y+
Sbjct: 85 YVDTPDYRCNYE 96
>TAIR9_protein||AT1G11190.1 | Symbols: BFN1, ENDO1 | BFN1 (BIFUNCTIONAL NUCLEASE
I); T/G mismatch-specific endonuclease/ endoribonuclease, producing
5'-phosphomonoesters / nucleic acid binding / single-stranded DNA
specific endodeoxyribonuclease | chr1:3750338-3752696 REVERSE
Length = 306
Score = 85 bits (208), Expect = 8e-018
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +1
Query: 79 IHGWGIEGHTTVCRIAQSRLSDAAADAVKQLLPKYAENDLGTVCIWADRVK--FRYHWSS 252
+ W EGH CRIAQ+ L A V+ LLP Y + DL +C+W D+++ ++Y W+S
Sbjct: 26 VRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTS 85
Query: 253 ALHYIDTPDNLCTYQ 297
LHYIDTPD C+Y+
Sbjct: 86 HLHYIDTPDQACSYE 100
>TAIR9_protein||AT4G21590.1 | Symbols: ENDO3 | ENDO3 (endonuclease 3); T/G
mismatch-specific endonuclease/ endonuclease/ nucleic acid binding /
single-stranded DNA specific endodeoxyribonuclease |
chr4:11480524-11482574 FORWARD
Length = 295
Score = 75 bits (184), Expect = 5e-015
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 88 WGIEGHTTVCRIAQSRLSDAAADAVKQLLPKYAENDLGTVCIWADRVKF--RYHWSSALH 261
WG GH VC+IAQS + AVK+LLP+ A +L VC W D +K ++ W+SALH
Sbjct: 25 WGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALH 84
Query: 262 YIDTPDNLCTYQ 297
+ DTPD C Y+
Sbjct: 85 FADTPDYKCNYE 96
>TAIR9_protein||AT4G21590.2 | Symbols: ENDO3 | ENDO3 (endonuclease 3); T/G
mismatch-specific endonuclease/ endonuclease/ nucleic acid binding /
single-stranded DNA specific endodeoxyribonuclease |
chr4:11480524-11482574 FORWARD
Length = 295
Score = 75 bits (184), Expect = 5e-015
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 88 WGIEGHTTVCRIAQSRLSDAAADAVKQLLPKYAENDLGTVCIWADRVKF--RYHWSSALH 261
WG GH VC+IAQS + AVK+LLP+ A +L VC W D +K ++ W+SALH
Sbjct: 25 WGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALH 84
Query: 262 YIDTPDNLCTYQ 297
+ DTPD C Y+
Sbjct: 85 FADTPDYKCNYE 96
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,954,139,568
Number of Sequences: 33410
Number of Extensions: 5954139568
Number of Successful Extensions: 327327827
Number of sequences better than 0.0: 0
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