BLASTX 7.6.2
Query= RU00510 /QuerySize=674
(673 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|147783406|emb|CAN75218.1| hypothetical protein [Vitis vinifera] 182 3e-044
gi|9758187|dbj|BAB08572.1| RNA-binding protein-like [Arabidopsis... 161 5e-038
gi|30696616|ref|NP_851195.1| RNA recognition motif (RRM)-contain... 161 5e-038
gi|22531168|gb|AAM97088.1| RNA-binding protein-like [Arabidopsis... 161 5e-038
gi|18423760|ref|NP_568826.1| RNA recognition motif (RRM)-contain... 161 5e-038
>gi|147783406|emb|CAN75218.1| hypothetical protein [Vitis vinifera]
Length = 482
Score = 182 bits (460), Expect = 3e-044
Identities = 95/137 (69%), Positives = 104/137 (75%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDE++LKEYF+ YGEVVEAVIMRDR TGRARGFGFVVFADPAVA
Sbjct: 1 MESDLGKLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GGSAHAKQNWGCTWFSWSWTHEKDLCWGVLASTVTEN 54
+RVV DKHMID RTVEAKK +N G S K + G LASTVTE+
Sbjct: 61 ERVVMDKHMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTES 120
Query: 53 DFKTYFDQFGTVTDVVV 3
DFK YFDQFGT+ DVVV
Sbjct: 121 DFKKYFDQFGTINDVVV 137
>gi|9758187|dbj|BAB08572.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 473
Score = 161 bits (406), Expect = 5e-038
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
>gi|30696616|ref|NP_851195.1| RNA recognition motif (RRM)-containing protein
[Arabidopsis thaliana]
Length = 448
Score = 161 bits (406), Expect = 5e-038
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
>gi|22531168|gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 448
Score = 161 bits (406), Expect = 5e-038
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
>gi|18423760|ref|NP_568826.1| RNA recognition motif (RRM)-containing protein
[Arabidopsis thaliana]
Length = 460
Score = 161 bits (406), Expect = 5e-038
Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 4/138 (2%)
Frame = -3
Query: 413 MEPDLGKIFIGGISWDTDEEQLKEYFQNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 234
ME DLGK+FIGGISWDTDEE+L++YF NYG+VVEAVIMRDRATGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 233 DRVVKDKHMIDSRTVEAKKGCS*GG----SAHAKQNWGCTWFSWSWTHEKDLCWGVLAST 66
+RV+ DKH+ID RTVEAKK HA + K + G L S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 65 VTENDFKTYFDQFGTVTD 12
+TE +FK YFDQFGT+ D
Sbjct: 121 ITEEEFKNYFDQFGTIAD 138
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,360,824,904
Number of Sequences: 7387702
Number of Extensions: 13360824904
Number of Successful Extensions: 15855185
Number of sequences better than 0.0: 0
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