BLASTX 7.6.2
Query= RU01026 /QuerySize=1219
(1218 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15594035|emb|CAC69852.1| nucleic acid binding protein [Nicoti... 347 1e-093
gi|157340971|emb|CAO47776.1| unnamed protein product [Vitis vini... 339 3e-091
gi|110681486|emb|CAL25353.1| ACBF-like dna binding protein [Plat... 337 1e-090
gi|2708532|gb|AAB92518.1| putative RNA binding protein [Nicotian... 330 1e-088
gi|157335464|emb|CAO61294.1| unnamed protein product [Vitis vini... 323 3e-086
>gi|15594035|emb|CAC69852.1| nucleic acid binding protein [Nicotiana tabacum]
Length = 456
Score = 347 bits (890), Expect = 1e-093
Identities = 182/309 (58%), Positives = 209/309 (67%), Gaps = 20/309 (6%)
Frame = +1
Query: 202 QSNGGSGDLSTTQQ--AQPNQQQQQQQQQQWMH---------QHQQQWMAMQYPAAAMAM 348
Q N G+ QQ QP+Q Q QQQ + QQ W+AMQYPAAAM M
Sbjct: 2 QKNNGTESQENKQQPPPQPSQPTASQPQQQGVSGGTVVPVVAAQQQPWVAMQYPAAAMVM 61
Query: 349 MQQQMMV--YPQHYMPTYAAHPHHNPYQQAQAAAAVAYQQQPPLKQQQQSQSQQKMGPTD 522
M YP HYMP + H HH + P QQQ +
Sbjct: 62 QHPMMPAPHYPPHYMPYHPHHHHHLLHHHPP-------PPHSPSPHQQQGGGGSNNNNNN 114
Query: 523 EVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTEGYGFVEFYSREAAEEV 702
E RTIW GDL +WMDE YL CFA T +V+S+KVIRNKQTG +EGYGFVEF++ AAE+V
Sbjct: 115 ENRTIWVGDLLNWMDEDYLRNCFASTNEVASIKVIRNKQTGFSEGYGFVEFFTHAAAEKV 174
Query: 703 LQTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLATDVTDTMLQETFASRY 882
LQTY+ MPN +QPFRLNWATFS GD+RA+ SDLSIFVGDLA DVTDT+L ETFA++Y
Sbjct: 175 LQTYSCMTMPNVDQPFRLNWATFSMGDKRANNGSDLSIFVGDLAADVTDTLLHETFATKY 234
Query: 883 TSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCSSRPMRIGVATPKKSSG 1062
SVK AKVV DANTGRSKGYGFVRFGD+NER++A+ EMNG YCSSRPMRIG ATP+KSSG
Sbjct: 235 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSG 294
Query: 1063 YQQQYSSQG 1089
YQQQYSSQG
Sbjct: 295 YQQQYSSQG 303
>gi|157340971|emb|CAO47776.1| unnamed protein product [Vitis vinifera]
Length = 384
Score = 339 bits (869), Expect = 3e-091
Identities = 157/214 (73%), Positives = 182/214 (85%)
Frame = +1
Query: 454 YQQQPPLKQQQQSQSQQKMGPTDEVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRN 633
+ QPP + Q Q Q G TDE++T+W GDLH WMD+ YL CF +TG+VSS+K+IRN
Sbjct: 26 HHPQPPQQYQNQPPQHQMHGSTDEIKTLWVGDLHQWMDDNYLRTCFGHTGEVSSIKIIRN 85
Query: 634 KQTGQTEGYGFVEFYSREAAEEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLS 813
KQTGQ+EGYGFVEF+SR AE++L +YNGT MPNTEQPFRLNWATFS GDRR D SDLS
Sbjct: 86 KQTGQSEGYGFVEFFSRATAEKILHSYNGTLMPNTEQPFRLNWATFSTGDRRTDAGSDLS 145
Query: 814 IFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVE 993
IFVGDLA+DVTD +LQETFA+RY SVKGAKVV D+NTGRSKGYGFVRFGDENER++A+ E
Sbjct: 146 IFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNE 205
Query: 994 MNGAYCSSRPMRIGVATPKKSSGYQQQYSSQGMI 1095
MNG YCSSRPMRIGVATPKK+SGYQQQYSSQ ++
Sbjct: 206 MNGIYCSSRPMRIGVATPKKASGYQQQYSSQALV 239
>gi|110681486|emb|CAL25353.1| ACBF-like dna binding protein [Platanus x
acerifolia]
Length = 216
Score = 337 bits (863), Expect = 1e-090
Identities = 159/205 (77%), Positives = 184/205 (89%)
Frame = +1
Query: 475 KQQQQSQSQQKMGPTDEVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQTE 654
+Q Q Q QQ+ G T+E +TIW GDLH+WMD YL+ CFA+TG+V S+KVIRNKQTGQ+E
Sbjct: 11 QQHTQHQQQQQQGLTEENKTIWVGDLHYWMDGNYLNNCFAHTGEVISIKVIRNKQTGQSE 70
Query: 655 GYGFVEFYSREAAEEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGDLA 834
GYGFVEF+SREAAE+VLQ YNGT MPNTEQPFRLNWA+FS G+RR++ SD SIFVGDL+
Sbjct: 71 GYGFVEFFSREAAEKVLQNYNGTAMPNTEQPFRLNWASFSMGERRSEAGSDHSIFVGDLS 130
Query: 835 TDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAYCS 1014
+DVTDT+LQETFASRY SVKGAKVV DANTGRSKGYGFVRFGD+NER++AI EMNGAYCS
Sbjct: 131 SDVTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSRAISEMNGAYCS 190
Query: 1015 SRPMRIGVATPKKSSGYQQQYSSQG 1089
+RPMR+GVATP+KSSGYQQQYSSQG
Sbjct: 191 NRPMRVGVATPRKSSGYQQQYSSQG 215
>gi|2708532|gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 330 bits (846), Expect = 1e-088
Identities = 174/286 (60%), Positives = 202/286 (70%), Gaps = 14/286 (4%)
Frame = +1
Query: 253 NQQQQQQQQQQWMHQHQQQWMAMQYPAAAMAMMQQQMMVYPQHYMPTYAAHPHHNPYQQA 432
NQQQQQQQQQQ Q QQQWMAMQ Q M YP M + Y
Sbjct: 59 NQQQQQQQQQQ-QQQQQQQWMAMQ-----QYQQQWMAMQYPAAAMAMQQQMMYGQQYMP- 111
Query: 433 QAAAAVAYQQQPPLKQQQQSQSQQKMGPTDEVRTIWAGDLHHWMDEAYLHGCFAYTGQVS 612
YQQ +Q+ Q Q +++ +TIW GDL WMDE+YLH CF+ G+V
Sbjct: 112 ------YYQQHQQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVI 165
Query: 613 SVKVIRNKQTGQTEGYGFVEFYSREAAEEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRA 792
SVK+IRNKQTGQ+E YGFVEF + AAE+VLQ+YNGT MPN EQPFRLNWA FS G++RA
Sbjct: 166 SVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRA 225
Query: 793 DTSSDLSIFVGDLATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENE 972
+T SD SIFVGDLA+DVTDTML++TFASRY S+KGAKVV DANTG SKGYGFVRFGDE+E
Sbjct: 226 ETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESE 285
Query: 973 RTKAIVEMNGAYCSSRPMRIGVATPKKSSGYQQQYSSQGMIEC*GF 1110
R++A+ EMNG YCSSR MRIGVATPKK S QQQYSSQ +I G+
Sbjct: 286 RSRAMTEMNGVYCSSRAMRIGVATPKKPSA-QQQYSSQAVILSGGY 330
>gi|157335464|emb|CAO61294.1| unnamed protein product [Vitis vinifera]
Length = 372
Score = 323 bits (826), Expect = 3e-086
Identities = 168/267 (62%), Positives = 191/267 (71%), Gaps = 10/267 (3%)
Frame = +1
Query: 301 QQQWMAMQYPAAAMAMMQQQM-MVYP--QHYMPTYAAHPHHNPYQQAQAAAAVAYQQQP- 468
QQ Q P QQ M M YP M P H P VAY QP
Sbjct: 10 QQANQQQQQPPPPPPQPQQWMAMQYPAAAMVMQHQMMPPQHYPQH------FVAYHHQPH 63
Query: 469 PLKQQQQSQSQQKMGPTDEVRTIWAGDLHHWMDEAYLHGCFAYTGQVSSVKVIRNKQTGQ 648
+ Q Q Q QQ+ G + RTIW GDLH+WMDE YLH CFA TG+++S+KVIRNKQTG
Sbjct: 64 QYQHQHQQQHQQQQGSNADNRTIWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGS 123
Query: 649 TEGYGFVEFYSREAAEEVLQTYNGTPMPNTEQPFRLNWATFSAGDRRADTSSDLSIFVGD 828
+EGYGFVEF+S AAE+VLQ Y G MPNT+QPFRLNWATFS GD+R+D DLSIFVGD
Sbjct: 124 SEGYGFVEFFSHAAAEKVLQGYAGVLMPNTDQPFRLNWATFSMGDKRSDNGPDLSIFVGD 183
Query: 829 LATDVTDTMLQETFASRYTSVKGAKVVQDANTGRSKGYGFVRFGDENERTKAIVEMNGAY 1008
LA+DV+D++L ETFA +Y SVK AKVV DANTGRSKGYGFVRFGDENER++A+ EMNG Y
Sbjct: 184 LASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVY 243
Query: 1009 CSSRPMRIGVATPKKSSGYQQQYSSQG 1089
CSSRPMRIG ATP+KSSGYQQQYSS G
Sbjct: 244 CSSRPMRIGAATPRKSSGYQQQYSSHG 270
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,402,855,968
Number of Sequences: 7387702
Number of Extensions: 60402855968
Number of Successful Extensions: 33472321
Number of sequences better than 0.0: 0
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