BLASTX 7.6.2
Query= RU01423 /QuerySize=198
(197 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|157355395|emb|CAO48785.1| unnamed protein product [Vitis vini... 78 2e-013
gi|79313163|ref|NP_001030661.1| unknown protein [Arabidopsis tha... 61 2e-008
gi|12322742|gb|AAG51366.1|AC012562_27 hypothetical protein; 7837... 61 2e-008
gi|22330921|ref|NP_187490.2| unknown protein [Arabidopsis thaliana] 61 2e-008
gi|116060081|emb|CAL56140.1| Membrane coat complex Retromer, sub... 55 1e-006
>gi|157355395|emb|CAO48785.1| unnamed protein product [Vitis vinifera]
Length = 306
Score = 78 bits (190), Expect = 2e-013
Identities = 44/65 (67%), Positives = 51/65 (78%), Gaps = 2/65 (3%)
Frame = +2
Query: 5 MEDPSVEKIAISGPALASMIQRFSTSRGAVDGLIFGHVSLIAP-TLSDDDS-SSSSSSST 178
M+D ++KI ISGP LASMIQRFST+ G VDGL+FGHVS IAP +LSDDD SSS ST
Sbjct: 1 MDDLPLQKIQISGPTLASMIQRFSTALGDVDGLLFGHVSHIAPSSLSDDDPLGSSSDPST 60
Query: 179 LIATV 193
+ATV
Sbjct: 61 FVATV 65
>gi|79313163|ref|NP_001030661.1| unknown protein [Arabidopsis thaliana]
Length = 312
Score = 61 bits (147), Expect = 2e-008
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Frame = +2
Query: 5 MEDPSVEKIAISGPALASMIQRFSTSRGAVDGLIFGHV-SLIAPTLSDD---DSSSSSSS 172
M+D S+EKI ISGP LAS+IQR S+S VDGLIFG + +++ LSDD D +SSSSS
Sbjct: 1 MDDLSLEKIEISGPTLASLIQRASSSPSDVDGLIFGQIHRIVSSNLSDDSPADIASSSSS 60
Query: 173 STLI 184
S I
Sbjct: 61 SDQI 64
>gi|12322742|gb|AAG51366.1|AC012562_27 hypothetical protein; 78375-76401
[Arabidopsis thaliana]
Length = 378
Score = 61 bits (147), Expect = 2e-008
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Frame = +2
Query: 5 MEDPSVEKIAISGPALASMIQRFSTSRGAVDGLIFGHV-SLIAPTLSDD---DSSSSSSS 172
M+D S+EKI ISGP LAS+IQR S+S VDGLIFG + +++ LSDD D +SSSSS
Sbjct: 1 MDDLSLEKIEISGPTLASLIQRASSSPSDVDGLIFGQIHRIVSSNLSDDSPADIASSSSS 60
Query: 173 STLI 184
S I
Sbjct: 61 SDQI 64
>gi|22330921|ref|NP_187490.2| unknown protein [Arabidopsis thaliana]
Length = 313
Score = 61 bits (147), Expect = 2e-008
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Frame = +2
Query: 5 MEDPSVEKIAISGPALASMIQRFSTSRGAVDGLIFGHV-SLIAPTLSDD---DSSSSSSS 172
M+D S+EKI ISGP LAS+IQR S+S VDGLIFG + +++ LSDD D +SSSSS
Sbjct: 1 MDDLSLEKIEISGPTLASLIQRASSSPSDVDGLIFGQIHRIVSSNLSDDSPADIASSSSS 60
Query: 173 STLI 184
S I
Sbjct: 61 SDQI 64
>gi|116060081|emb|CAL56140.1| Membrane coat complex Retromer, subunit VPS5/SNX1,
Sorting nexins, and related PX domain-containing proteins (ISS)
[Ostreococcus tauri]
Length = 685
Score = 55 bits (132), Expect = 1e-006
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 QWKILP*RKSQSPARPWPP*SNASPPPAAPSTA*SSATSASSPPLSPTTIPPPPPPPLPS 182
+WK R++ + RP PP +S P A P +SA +AS+ P P PPPPPPP P
Sbjct: 482 EWKATV-RQALAEGRPVPPRPGSSAPMAMPPVTLASARAASTTPPPPPPPPPPPPPPPPP 540
Query: 183 SPPSP 197
PP P
Sbjct: 541 PPPPP 545
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,402,855,968
Number of Sequences: 7387702
Number of Extensions: 60402855968
Number of Successful Extensions: 33472321
Number of sequences better than 0.0: 0
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