BLASTX 7.6.2
Query= RU01450 /QuerySize=726
(725 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|1763063|gb|AAB39638.1| SCOF-1 [Glycine max] 196 1e-048
gi|207113465|gb|ACI23460.1| putative Cys2-His2 type zinc finger ... 196 2e-048
gi|118489658|gb|ABK96630.1| unknown [Populus trichocarpa x Popul... 196 2e-048
gi|55734108|emb|CAF74935.1| zinc finger DNA-binding protein [Cat... 183 2e-044
gi|439493|dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida] 137 1e-030
>gi|1763063|gb|AAB39638.1| SCOF-1 [Glycine max]
Length = 240
Score = 196 bits (498), Expect = 1e-048
Identities = 101/163 (61%), Positives = 118/163 (72%), Gaps = 12/163 (7%)
Frame = +1
Query: 49 LSYKCSVCDKSFPSYQALGGHKASHRKGSSAVTGGEGPSTSSTTTTTSAATVSNASGRSH 228
LSYKCSVCDKSFPSYQALGGHKASHRK + G STTT+++AAT S + G++H
Sbjct: 83 LSYKCSVCDKSFPSYQALGGHKASHRK----LAGAAEDQPPSTTTSSAAATSSASGGKAH 138
Query: 229 ECSICHKSFPTGQALGGHKRCHYEGGATATRSAATTSAVTTSEGVGSTTHTVSQSHQHRE 408
ECSICHKSFPTGQALGGHKRCHYEG + + + SEGVGS THTV SH H
Sbjct: 139 ECSICHKSFPTGQALGGHKRCHYEGNGNGNNNNSNSVVTVASEGVGS-THTV--SHGHHR 195
Query: 409 AFDLNLPAFPEPLSRNFFLSGDDEVESPHPT-KKPRLFMTPKV 534
FDLN+PAFP+ ++ G+DEVESPHP KKPRLF+ PK+
Sbjct: 196 DFDLNIPAFPDFSTK----VGEDEVESPHPVMKKPRLFVIPKI 234
>gi|207113465|gb|ACI23460.1| putative Cys2-His2 type zinc finger protein
[Glycine soja]
Length = 233
Score = 196 bits (497), Expect = 2e-048
Identities = 102/163 (62%), Positives = 121/163 (74%), Gaps = 12/163 (7%)
Frame = +1
Query: 49 LSYKCSVCDKSFPSYQALGGHKASHRKGSSAVTGGEGPSTSSTTTTTSAATVSNASGRSH 228
LSYKCSVC+KSFPSYQALGGHKASHRK A +GGE T++++ +SA T S GR+H
Sbjct: 76 LSYKCSVCNKSFPSYQALGGHKASHRK--LAASGGEDQPTTTSSAASSANTAS--GGRTH 131
Query: 229 ECSICHKSFPTGQALGGHKRCHYEGGATATRSAATTSAVTTSEGVGSTTHTVSQSHQHRE 408
ECSICHKSFPTGQALGGHKRCHYEG + + + +S SEGVGS THTV SH H
Sbjct: 132 ECSICHKSFPTGQALGGHKRCHYEGNSNGNNNNSNSSVTAASEGVGS-THTV--SHGHHR 188
Query: 409 AFDLNLPAFPEPLSRNFFLSGDDEVESPHPT-KKPRLFMTPKV 534
FDLN+PAFP+ ++ G+DEVESPHP KKPRLF+ PK+
Sbjct: 189 DFDLNIPAFPDFSTK----VGEDEVESPHPVMKKPRLFVIPKI 227
>gi|118489658|gb|ABK96630.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 252
Score = 196 bits (496), Expect = 2e-048
Identities = 103/169 (60%), Positives = 121/169 (71%), Gaps = 10/169 (5%)
Frame = +1
Query: 43 QLLSYKCSVCDKSFPSYQALGGHKASHRKGSSAVTGGEGPSTSSTTTTTSAATVSNASGR 222
Q +SYKCSVC+K FPSYQALGGHKASHRK GGE +TS TTT+ + VSN SGR
Sbjct: 89 QKISYKCSVCNKEFPSYQALGGHKASHRK---LAGGGEDQTTSCTTTSATTTPVSNGSGR 145
Query: 223 SHECSICHKSFPTGQALGGHKRCHYEGGATATRSAATTSAVTTSEGVGST-THTVSQSHQ 399
HECSICH++FPTGQALGGHKRCHYEG + TS TSEG GST T T S +H
Sbjct: 146 VHECSICHRTFPTGQALGGHKRCHYEGIIGGAEKSGVTS---TSEGAGSTNTRTHSHNHS 202
Query: 400 HREAFDLNLPAFPEPLSRNFFLSGDDEVESPHP-TKKPRLFMTPKVEIS 543
H + FDLN+PA PE S +FF+SGDDEV SP P K+ R+ M P++E+S
Sbjct: 203 HHD-FDLNVPALPE-FSSDFFVSGDDEVMSPLPAAKRIRILMAPRIEVS 249
>gi|55734108|emb|CAF74935.1| zinc finger DNA-binding protein [Catharanthus
roseus]
Length = 259
Score = 183 bits (462), Expect = 2e-044
Identities = 102/166 (61%), Positives = 120/166 (72%), Gaps = 20/166 (12%)
Frame = +1
Query: 49 LSYKCSVCDKSFPSYQALGGHKASHRKGSSA-VTGGEGPSTSSTTTTTSAATVSNASGRS 225
L YKCSVCDK+F SYQALGGHKASHRK S+A GG+ ST+ST+TTT+AA A+GR+
Sbjct: 102 LLYKCSVCDKAFSSYQALGGHKASHRKLSTASAGGGDDQSTTSTSTTTAAA----ATGRT 157
Query: 226 HECSICHKSFPTGQALGGHKRCHYEGGATATRSAA-TTSAVTTSEGVGSTTHTVSQSHQH 402
HECSICHK FP+GQALGGHKRCHYEGGA A S S VT+SEG+GST +H +
Sbjct: 158 HECSICHKCFPSGQALGGHKRCHYEGGAGAVGSTGNAASGVTSSEGMGST-----NTHSN 212
Query: 403 REAFDLNLPAFPEPLSRNFFL---SGDDEVESPHPTKKPRLFMTPK 531
R+ FDLNLPA PE F+L +GDDEV SPHP K+ R + K
Sbjct: 213 RD-FDLNLPALPE-----FWLAAAAGDDEVSSPHPAKRSRFALPIK 252
>gi|439493|dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida]
Length = 253
Score = 137 bits (343), Expect = 1e-030
Identities = 72/109 (66%), Positives = 82/109 (75%), Gaps = 7/109 (6%)
Frame = +1
Query: 55 YKCSVCDKSFPSYQALGGHKASHRKGSSAVTGGEGPSTSSTTTT---TSAATVSNASGRS 225
YKCSVC K F SYQALGGHKASHRK S GG+ ST+STTT TS+A V N +GR+
Sbjct: 98 YKCSVCGKGFGSYQALGGHKASHRKLVS--MGGDEQSTTSTTTNVTGTSSANV-NGNGRT 154
Query: 226 HECSICHKSFPTGQALGGHKRCHYEGGATATRSAATTSAVTTSEGVGST 372
HECSICHK FPTGQALGGHKRCHY+GG + + + VT+SEGVGST
Sbjct: 155 HECSICHKCFPTGQALGGHKRCHYDGG-NGNGNGSVSVGVTSSEGVGST 202
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,402,855,968
Number of Sequences: 7387702
Number of Extensions: 60402855968
Number of Successful Extensions: 33472321
Number of sequences better than 0.0: 0
|