BLASTX 7.6.2
Query= RU01622 /QuerySize=595
(594 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15234669|ref|NP_194751.1| RUXF (SMALL NUCLEAR RIBONUCLEOPROTE... 171 3e-041
gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa (jap... 167 7e-040
gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa (jap... 167 7e-040
gi|194696080|gb|ACF82124.1| unknown [Zea mays] 164 3e-039
gi|195639214|gb|ACG39075.1| unknown [Zea mays] 164 4e-039
>gi|15234669|ref|NP_194751.1| RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
[Arabidopsis thaliana]
Length = 88
Score = 171 bits (433), Expect = 3e-041
Identities = 81/88 (92%), Positives = 84/88 (95%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
MATIPVNPKPFLNNLTGKTV VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60
Query: 245 GEILIRCNNVLYLRGVPEDEEIEDAEQD 328
GEILIRCNNVLY+RGVPEDEE+EDA+QD
Sbjct: 61 GEILIRCNNVLYVRGVPEDEELEDADQD 88
>gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa (japonica
cultivar-group)]
Length = 86
Score = 167 bits (421), Expect = 7e-040
Identities = 79/86 (91%), Positives = 83/86 (96%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
MAT+PVNPKPFLNNLTGK V VKLKWGMEYKG+LVSVDSYMNLQLANTEEYIDGQ++GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 245 GEILIRCNNVLYLRGVPEDEEIEDAE 322
GEILIRCNNVLYLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVLYLRGVPEDTEIEDAE 86
>gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa (japonica
cultivar-group)]
Length = 86
Score = 167 bits (421), Expect = 7e-040
Identities = 79/86 (91%), Positives = 83/86 (96%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
MAT+PVNPKPFLNNLTGK V VKLKWGMEYKG+LVSVDSYMNLQLANTEEYIDGQ++GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 245 GEILIRCNNVLYLRGVPEDEEIEDAE 322
GEILIRCNNVLYLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVLYLRGVPEDAEIEDAE 86
>gi|194696080|gb|ACF82124.1| unknown [Zea mays]
Length = 86
Score = 164 bits (415), Expect = 3e-039
Identities = 77/86 (89%), Positives = 82/86 (95%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
MAT+PVNPKPFLNNLTGK V VKLKWGMEYKG+L SVDSYMNLQLANTEEYIDGQ++GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 245 GEILIRCNNVLYLRGVPEDEEIEDAE 322
GEILIRCNNV+YLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVMYLRGVPEDAEIEDAE 86
>gi|195639214|gb|ACG39075.1| unknown [Zea mays]
Length = 86
Score = 164 bits (414), Expect = 4e-039
Identities = 76/86 (88%), Positives = 82/86 (95%)
Frame = +2
Query: 65 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQWTGNL 244
MAT+PVNPKPFLNNLTGK + VKLKWGMEYKG+L SVDSYMNLQLANTEEYIDGQ++GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPIIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 245 GEILIRCNNVLYLRGVPEDEEIEDAE 322
GEILIRCNNV+YLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVMYLRGVPEDAEIEDAE 86
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,402,855,968
Number of Sequences: 7387702
Number of Extensions: 60402855968
Number of Successful Extensions: 33472321
Number of sequences better than 0.0: 0
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