BLASTX 7.6.2
Query= RU01681 /QuerySize=1015
(1014 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|1370166|emb|CAA98160.1| RAB1C [Lotus japonicus] 399 2e-109
gi|4586580|dbj|BAA76422.1| rab-type small GTP-binding protein [C... 398 7e-109
gi|303750|dbj|BAA02116.1| GTP-binding protein [Pisum sativum] 392 4e-107
gi|303734|dbj|BAA02118.1| GTP-binding protein [Pisum sativum] 380 1e-103
gi|15236555|ref|NP_193486.1| RAB1C; GTP binding [Arabidopsis tha... 378 6e-103
>gi|1370166|emb|CAA98160.1| RAB1C [Lotus japonicus]
Length = 202
Score = 399 bits (1025), Expect = 2e-109
Identities = 198/202 (98%), Positives = 200/202 (99%)
Frame = +1
Query: 178 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 357
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 358 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 537
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 538 NKCDLTANKVVSTETAKAFADEIGIPFMETSAKNSTNVEQAFMAMAAEIKNRMASQPMNN 717
NKCDLT NKVVS ETAKAFADEIGIPFMETSAKN+TNVEQAFMAMAAEIKNRMASQP+NN
Sbjct: 121 NKCDLTENKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNN 180
Query: 718 ARPPTVQIRGQPVNQKSGCCSS 783
ARPPTVQIRGQPVNQKSGCCSS
Sbjct: 181 ARPPTVQIRGQPVNQKSGCCSS 202
>gi|4586580|dbj|BAA76422.1| rab-type small GTP-binding protein [Cicer
arietinum]
Length = 202
Score = 398 bits (1020), Expect = 7e-109
Identities = 196/202 (97%), Positives = 200/202 (99%)
Frame = +1
Query: 178 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 357
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 358 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 537
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 538 NKCDLTANKVVSTETAKAFADEIGIPFMETSAKNSTNVEQAFMAMAAEIKNRMASQPMNN 717
NKCDL ANKVVS+ETAKAFADEIGIPFMETSAKN+TNVEQAFMAMAAEIKNRMASQP NN
Sbjct: 121 NKCDLAANKVVSSETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPANN 180
Query: 718 ARPPTVQIRGQPVNQKSGCCSS 783
ARPPTVQIRGQP+NQKSGCCS+
Sbjct: 181 ARPPTVQIRGQPMNQKSGCCST 202
>gi|303750|dbj|BAA02116.1| GTP-binding protein [Pisum sativum]
Length = 202
Score = 392 bits (1005), Expect = 4e-107
Identities = 195/202 (96%), Positives = 197/202 (97%)
Frame = +1
Query: 178 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 357
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 358 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 537
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 538 NKCDLTANKVVSTETAKAFADEIGIPFMETSAKNSTNVEQAFMAMAAEIKNRMASQPMNN 717
NK DL NKVVS+ETAKAFADEIGIPFMETSAKN+ NVEQAFMAMAAEIKNRMASQP NN
Sbjct: 121 NKSDLADNKVVSSETAKAFADEIGIPFMETSAKNANNVEQAFMAMAAEIKNRMASQPSNN 180
Query: 718 ARPPTVQIRGQPVNQKSGCCSS 783
ARPPTVQIRGQPVNQKSGCCSS
Sbjct: 181 ARPPTVQIRGQPVNQKSGCCSS 202
>gi|303734|dbj|BAA02118.1| GTP-binding protein [Pisum sativum]
Length = 202
Score = 380 bits (975), Expect = 1e-103
Identities = 186/202 (92%), Positives = 194/202 (96%)
Frame = +1
Query: 178 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 357
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY+DSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 358 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 537
IWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120
Query: 538 NKCDLTANKVVSTETAKAFADEIGIPFMETSAKNSTNVEQAFMAMAAEIKNRMASQPMNN 717
NKCDLT N+ V ETAKAFADEIGIPFMETSAK+STNVEQAFMAMA+ IK RMASQP NN
Sbjct: 121 NKCDLTENRAVPYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKERMASQPTNN 180
Query: 718 ARPPTVQIRGQPVNQKSGCCSS 783
ARPPTVQIRGQPV QKSGCCSS
Sbjct: 181 ARPPTVQIRGQPVGQKSGCCSS 202
>gi|15236555|ref|NP_193486.1| RAB1C; GTP binding [Arabidopsis thaliana]
Length = 202
Score = 378 bits (969), Expect = 6e-103
Identities = 185/202 (91%), Positives = 193/202 (95%)
Frame = +1
Query: 178 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 357
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 358 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 537
IWDTAGQERFRTITSSYYRGAHGIIV YDVTD ESFNNVKQWLNEIDRYASENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 538 NKCDLTANKVVSTETAKAFADEIGIPFMETSAKNSTNVEQAFMAMAAEIKNRMASQPMNN 717
NKCDLT+ KVVSTETAKAFADE+GIPF+ETSAKN+TNVE+AFMAM A IK RMASQP
Sbjct: 121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG 180
Query: 718 ARPPTVQIRGQPVNQKSGCCSS 783
++PPTVQIRGQPVNQ+SGCCSS
Sbjct: 181 SKPPTVQIRGQPVNQQSGCCSS 202
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,402,855,968
Number of Sequences: 7387702
Number of Extensions: 60402855968
Number of Successful Extensions: 33472321
Number of sequences better than 0.0: 0
|