BLASTX 7.6.2
Query= RU01690 /QuerySize=1591
(1590 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|87241031|gb|ABD32889.1| AAA ATPase; 26S proteasome subunit P4... 849 2e-244
gi|15235544|ref|NP_194633.1| RPT2A (REGULATORY PARTICLE AAA-ATPA... 836 1e-240
gi|15225307|ref|NP_179604.1| 26S protease regulatory complex sub... 834 7e-240
gi|11045086|emb|CAC14432.1| 26S proteasome subunit 4-like protei... 833 9e-240
gi|6652880|gb|AAF22522.1|AF123391_1 26S proteasome AAA-ATPase su... 833 1e-239
>gi|87241031|gb|ABD32889.1| AAA ATPase; 26S proteasome subunit P45 [Medicago
truncatula]
Length = 445
Score = 849 bits (2192), Expect = 2e-244
Identities = 435/446 (97%), Positives = 440/446 (98%), Gaps = 3/446 (0%)
Frame = +2
Query: 62 GQGTP-GGLNRQGLPGDRKPDGNDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 238
GQGTP GGLNRQ PGDRKPDGNDKK+KKFEPAAPPARVGRKQRKQKG EAA+RLPTVTP
Sbjct: 2 GQGTPGGGLNRQ--PGDRKPDGNDKKDKKFEPAAPPARVGRKQRKQKGSEAASRLPTVTP 59
Query: 239 LTKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 418
L+KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE
Sbjct: 60 LSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 119
Query: 419 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 598
LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM
Sbjct: 120 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 179
Query: 599 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTL 778
KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTL
Sbjct: 180 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 239
Query: 779 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 958
LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR
Sbjct: 240 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 299
Query: 959 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 1138
YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP
Sbjct: 300 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 359
Query: 1139 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 1318
LPDIKTRRRIF IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV
Sbjct: 360 LPDIKTRRRIFTIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 419
Query: 1319 THADFKKAKEKVMFKKKEGVPEGLYM 1396
THADFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 420 THADFKKAKDKVMFKKKEGVPEGLYM 445
>gi|15235544|ref|NP_194633.1| RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A); ATPase
[Arabidopsis thaliana]
Length = 443
Score = 836 bits (2159), Expect = 1e-240
Identities = 426/443 (96%), Positives = 434/443 (97%), Gaps = 3/443 (0%)
Frame = +2
Query: 68 GTPGGLNRQGLPGDRKPDGNDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTK 247
G GGLNRQ GDRKPDG DKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP TK
Sbjct: 4 GPSGGLNRQ---GDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTK 60
Query: 248 CKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELID 427
CKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELID
Sbjct: 61 CKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELID 120
Query: 428 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVE 607
ENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVE
Sbjct: 121 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVE 180
Query: 608 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAK 787
KAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTLLAK
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 788 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 967
AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 300
Query: 968 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 1147
HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD
Sbjct: 301 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 360
Query: 1148 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHA 1327
IKTRRRIFQIHTS+MTL++DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH
Sbjct: 361 IKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHP 420
Query: 1328 DFKKAKEKVMFKKKEGVPEGLYM 1396
DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 421 DFKKAKEKVMFKKKEGVPEGLYM 443
>gi|15225307|ref|NP_179604.1| 26S protease regulatory complex subunit 4,
putative [Arabidopsis thaliana]
Length = 443
Score = 834 bits (2152), Expect = 7e-240
Identities = 425/443 (95%), Positives = 434/443 (97%), Gaps = 3/443 (0%)
Frame = +2
Query: 68 GTPGGLNRQGLPGDRKPDGNDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTK 247
G GGLNRQ GDRKPDG +KKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP TK
Sbjct: 4 GPSGGLNRQ---GDRKPDGGEKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTK 60
Query: 248 CKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELID 427
CKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELID
Sbjct: 61 CKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELID 120
Query: 428 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVE 607
ENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVE
Sbjct: 121 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVE 180
Query: 608 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAK 787
KAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTLLAK
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 788 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 967
AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 300
Query: 968 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 1147
+SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD
Sbjct: 301 NSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 360
Query: 1148 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHA 1327
IKTRRRIFQIHTS+MTLA+DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH
Sbjct: 361 IKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHV 420
Query: 1328 DFKKAKEKVMFKKKEGVPEGLYM 1396
DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 421 DFKKAKEKVMFKKKEGVPEGLYM 443
>gi|11045086|emb|CAC14432.1| 26S proteasome subunit 4-like protein [Brassica
napus]
Length = 443
Score = 833 bits (2151), Expect = 9e-240
Identities = 423/443 (95%), Positives = 435/443 (98%), Gaps = 3/443 (0%)
Frame = +2
Query: 68 GTPGGLNRQGLPGDRKPDGNDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTK 247
G GGLNR PGDRKPDGN+KKEKKFEPAAPP+RVGRKQRKQKGPEAAARLPTVTP TK
Sbjct: 4 GPSGGLNR---PGDRKPDGNEKKEKKFEPAAPPSRVGRKQRKQKGPEAAARLPTVTPSTK 60
Query: 248 CKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELID 427
CKLRLLK+ERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELID
Sbjct: 61 CKLRLLKMERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELID 120
Query: 428 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVE 607
ENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVE
Sbjct: 121 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVE 180
Query: 608 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAK 787
KAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTLLAK
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 788 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 967
AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 300
Query: 968 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 1147
+SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD
Sbjct: 301 NSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 360
Query: 1148 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHA 1327
IKTRRRIFQIHTS+MTL++DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH
Sbjct: 361 IKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHP 420
Query: 1328 DFKKAKEKVMFKKKEGVPEGLYM 1396
DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 421 DFKKAKEKVMFKKKEGVPEGLYM 443
>gi|6652880|gb|AAF22522.1|AF123391_1 26S proteasome AAA-ATPase subunit RPT2a
[Arabidopsis thaliana]
Length = 443
Score = 833 bits (2150), Expect = 1e-239
Identities = 425/443 (95%), Positives = 433/443 (97%), Gaps = 3/443 (0%)
Frame = +2
Query: 68 GTPGGLNRQGLPGDRKPDGNDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLTK 247
G GGLNRQ GDRKPDG DKKEKKFEPAAPPARV RKQRKQKGPEAAARLPTVTP TK
Sbjct: 4 GPSGGLNRQ---GDRKPDGGDKKEKKFEPAAPPARVVRKQRKQKGPEAAARLPTVTPSTK 60
Query: 248 CKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELID 427
CKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELID
Sbjct: 61 CKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELID 120
Query: 428 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVE 607
ENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVMKVE
Sbjct: 121 ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVE 180
Query: 608 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAK 787
KAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGKTLLAK
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 788 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 967
AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 300
Query: 968 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 1147
HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD
Sbjct: 301 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 360
Query: 1148 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHA 1327
IKTRRRIFQIHTS+MTL++DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH
Sbjct: 361 IKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHP 420
Query: 1328 DFKKAKEKVMFKKKEGVPEGLYM 1396
DFKKAKEKVMFKKKEGVPEGLYM
Sbjct: 421 DFKKAKEKVMFKKKEGVPEGLYM 443
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,402,855,968
Number of Sequences: 7387702
Number of Extensions: 60402855968
Number of Successful Extensions: 33472321
Number of sequences better than 0.0: 0
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