BLASTX 7.6.2
Query= RU03032 /QuerySize=497
(496 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|118486668|gb|ABK95171.1| unknown [Populus trichocarpa] 200 6e-050
gi|15238976|ref|NP_196680.1| SHN3 (SHINE3); DNA binding / transc... 188 2e-046
gi|81022813|gb|ABB55257.1| AP2 transcription factor [Brassica ca... 184 3e-045
gi|81022811|gb|ABB55256.1| AP2 transcription factor [Brassica ju... 180 5e-044
gi|15218134|ref|NP_172988.1| SHN1/WIN1 (SHINE1); DNA binding / t... 179 6e-044
>gi|118486668|gb|ABK95171.1| unknown [Populus trichocarpa]
Length = 178
Score = 200 bits (506), Expect = 6e-050
Identities = 102/131 (77%), Positives = 112/131 (85%), Gaps = 8/131 (6%)
Frame = -2
Query: 393 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKT 214
MVQS+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQA+ILMNGQNAKT
Sbjct: 1 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKT 60
Query: 213 NFPNNNPPSDDQETKPTDHLPHGHQLPWDPKELAELLSSKLKKCC-KDPSPSLTCLRLDN 37
NFP ++ DQ+T +L + P K LAELL+SKL+KCC KDPSPSLTCLRLDN
Sbjct: 61 NFPTSHL---DQDT----NLGKDNNSPLPAKALAELLNSKLRKCCGKDPSPSLTCLRLDN 113
Query: 36 DNSHIGVWQKR 4
DNSHIGVWQK+
Sbjct: 114 DNSHIGVWQKK 124
>gi|15238976|ref|NP_196680.1| SHN3 (SHINE3); DNA binding / transcription factor
[Arabidopsis thaliana]
Length = 189
Score = 188 bits (475), Expect = 2e-046
Identities = 93/130 (71%), Positives = 106/130 (81%), Gaps = 6/130 (4%)
Frame = -2
Query: 393 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKT 214
MV SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQA++LMNGQNAKT
Sbjct: 1 MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60
Query: 213 NFPNNNPPSDDQETKPTDHLPHGHQLPWDPKELAELLSSKLKKCCKDPSPSLTCLRLDND 34
NFP + + +DH+ + PK L+ELL++KL+K CKD +PSLTCLRLD D
Sbjct: 61 NFP------VVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTD 114
Query: 33 NSHIGVWQKR 4
+SHIGVWQKR
Sbjct: 115 SSHIGVWQKR 124
>gi|81022813|gb|ABB55257.1| AP2 transcription factor [Brassica carinata]
Length = 197
Score = 184 bits (466), Expect = 3e-045
Identities = 85/130 (65%), Positives = 102/130 (78%)
Frame = -2
Query: 393 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKT 214
MVQ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTFETAE AARAYD+A++LM+G+NAKT
Sbjct: 1 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60
Query: 213 NFPNNNPPSDDQETKPTDHLPHGHQLPWDPKELAELLSSKLKKCCKDPSPSLTCLRLDND 34
NFP NN + E+K + L+ +LS+KL+KCCK PSPSLTCLRLD
Sbjct: 61 NFPLNNSTGNTSESKTDVSASASSSISSSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTT 120
Query: 33 NSHIGVWQKR 4
+SHIGVWQKR
Sbjct: 121 SSHIGVWQKR 130
>gi|81022811|gb|ABB55256.1| AP2 transcription factor [Brassica juncea]
Length = 200
Score = 180 bits (455), Expect = 5e-044
Identities = 88/130 (67%), Positives = 102/130 (78%), Gaps = 6/130 (4%)
Frame = -2
Query: 393 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKT 214
MVQ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTFETAE AARAYD+A++LM+G+NAKT
Sbjct: 1 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60
Query: 213 NFPNNNPPSDDQETKPTDHLPHGHQLPWDPKELAELLSSKLKKCCKDPSPSLTCLRLDND 34
NFP NN D E K TD L+ +LS+KL+KCCK PSPSLTCLRLD
Sbjct: 61 NFPLNNNTGDTSEGK-TDISASS-----SSSSLSSILSAKLRKCCKSPSPSLTCLRLDTA 114
Query: 33 NSHIGVWQKR 4
+SHIGVWQKR
Sbjct: 115 SSHIGVWQKR 124
>gi|15218134|ref|NP_172988.1| SHN1/WIN1 (SHINE1); DNA binding / transcription
factor [Arabidopsis thaliana]
Length = 199
Score = 179 bits (454), Expect = 6e-044
Identities = 86/131 (65%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = -2
Query: 393 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKT 214
MVQ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTFETAE AARAYD+A++LM+G+NAKT
Sbjct: 1 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60
Query: 213 NFP-NNNPPSDDQETKPTDHLPHGHQLPWDPKELAELLSSKLKKCCKDPSPSLTCLRLDN 37
NFP NNN + E K L+ +LS+KL+KCCK PSPSLTCLRLD
Sbjct: 61 NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120
Query: 36 DNSHIGVWQKR 4
+SHIGVWQKR
Sbjct: 121 ASSHIGVWQKR 131
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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