BLASTX 7.6.2
Query= RU03064 /QuerySize=505
(504 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|118487685|gb|ABK95667.1| unknown [Populus trichocarpa] 141 3e-032
gi|21537121|gb|AAM61462.1| photosystem II [Arabidopsis thaliana] 116 1e-024
gi|18403499|ref|NP_564589.1| photosystem II 5 kD protein [Arabid... 114 3e-024
gi|147792102|emb|CAN66292.1| hypothetical protein [Vitis vinifera] 111 2e-023
gi|400198|sp|P31336.1|PST2_GOSHI RecName: Full=Photosystem II 5 ... 107 6e-022
>gi|118487685|gb|ABK95667.1| unknown [Populus trichocarpa]
Length = 105
Score = 141 bits (353), Expect = 3e-032
Identities = 84/108 (77%), Positives = 91/108 (84%), Gaps = 7/108 (6%)
Frame = +1
Query: 100 MASMTMTASFLA-STITKP--STPRRSLIVAKASRAPEAEKVTVEMKKGKEENSSGRRDL 270
MASMTMTASFLA ST+ K +TPRR LIVAKASR E V VEM K KEE+SSGRRDL
Sbjct: 1 MASMTMTASFLAGSTMAKQPLTTPRRGLIVAKASRTTEG--VNVEM-KNKEESSSGRRDL 57
Query: 271 IFAAAAAAACSIAKVAMAD-EPERGTPAAKKKYAPVCVTMPTARICRK 411
+FAAAAAAA SIA+VA+AD EPERGTP AKKKYAP+CVTMPTARICRK
Sbjct: 58 MFAAAAAAAYSIARVAIADEEPERGTPEAKKKYAPICVTMPTARICRK 105
>gi|21537121|gb|AAM61462.1| photosystem II [Arabidopsis thaliana]
Length = 106
Score = 116 bits (288), Expect = 1e-024
Identities = 68/108 (62%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Frame = +1
Query: 100 MASMTMTASFLASTITKP----STPRRSLIVAKASRAPEAEKVTVEMKKGKEENSSGRRD 267
MASMTMT+SFL + P S RRSL V KAS +E T K +E++ RRD
Sbjct: 1 MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKAS---GSENTTSLENKEQEQSMKMRRD 57
Query: 268 LIFAAAAAAACSIAKVAMA-DEPERGTPAAKKKYAPVCVTMPTARICR 408
L+F AAAAA CS+AKVAMA DEP+RGT AAKKKYAPVCVTMPTARICR
Sbjct: 58 LVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTARICR 105
>gi|18403499|ref|NP_564589.1| photosystem II 5 kD protein [Arabidopsis
thaliana]
Length = 106
Score = 114 bits (285), Expect = 3e-024
Identities = 67/108 (62%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Frame = +1
Query: 100 MASMTMTASFLASTITKP----STPRRSLIVAKASRAPEAEKVTVEMKKGKEENSSGRRD 267
MASMTMT+SFL + P S RRSL V KAS +E T K +E++ RRD
Sbjct: 1 MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKAS---GSENTTSLENKKQEQSMKMRRD 57
Query: 268 LIFAAAAAAACSIAKVAMA-DEPERGTPAAKKKYAPVCVTMPTARICR 408
L+F AAAAA CS+AKVAMA DEP+RGT AAKKKYAPVCVTMPTA+ICR
Sbjct: 58 LVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICR 105
>gi|147792102|emb|CAN66292.1| hypothetical protein [Vitis vinifera]
Length = 109
Score = 111 bits (277), Expect = 2e-023
Identities = 59/109 (54%), Positives = 77/109 (70%), Gaps = 5/109 (4%)
Frame = +1
Query: 100 MASMTMTASFLASTITKPSTP----RRSLIVAKASRAPEAEKVTVEMK-KGKEENSSGRR 264
MAS+TMT+SFL +P RR L+V ++RA AE V++ K+E ++GRR
Sbjct: 1 MASVTMTSSFLGGACLADRSPAAAARRRLVVVNSARAAAAEGEKVKLNYDAKKEANNGRR 60
Query: 265 DLIFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTARICRK 411
+L+FAAAAAA CS+A +AMA EP+ GTP AKK YAP+CVTMPTA+IC K
Sbjct: 61 ELVFAAAAAAVCSVAGIAMAGEPKPGTPEAKKIYAPICVTMPTAKICHK 109
>gi|400198|sp|P31336.1|PST2_GOSHI RecName: Full=Photosystem II 5 kDa protein,
chloroplastic; Short=PSII-T; AltName: Full=Light-regulated unknown 11
kDa protein; Flags: Precursor
Length = 105
Score = 107 bits (265), Expect = 6e-022
Identities = 59/106 (55%), Positives = 78/106 (73%), Gaps = 5/106 (4%)
Frame = +1
Query: 100 MASMTMTASFLASTITKPSTPR---RSLIVAKASRAPEAEKVTVEMKKGKEENSSGRRDL 270
MAS+TMT SFL++T +PR R L+VA A++ + E V + ++ K E ++GRR++
Sbjct: 1 MASITMTTSFLSTTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGER-KTEGNNGRREM 59
Query: 271 IFAAAAAAACSIAKVAMADEPERGTPAAKKKYAPVCVTMPTARICR 408
+FAAAAAA CS+A VA A EP+RG+ AKK YAPVCVTMPTARICR
Sbjct: 60 MFAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTARICR 104
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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