BLASTX 7.6.2
Query= RU03192 /QuerySize=1186
(1185 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|3334320|sp|O22518|RSSA_SOYBN 40S ribosomal protein SA (p40) 462 3e-128
gi|125544237|gb|EAY90376.1| hypothetical protein OsI_011609 [Ory... 455 6e-126
gi|118481301|gb|ABK92594.1| unknown [Populus trichocarpa] 454 8e-126
gi|147782664|emb|CAN61790.1| hypothetical protein [Vitis vinifera] 453 2e-125
gi|118481845|gb|ABK92859.1| unknown [Populus trichocarpa] 451 9e-125
>gi|3334320|sp|O22518|RSSA_SOYBN 40S ribosomal protein SA (p40)
Length = 310
Score = 462 bits (1188), Expect = 3e-128
Identities = 242/311 (77%), Positives = 253/311 (81%), Gaps = 11/311 (3%)
Frame = +2
Query: 83 MATTT---AAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGK 253
MAT T AAPPRQLSQKEADIQMMLAA+VHLGTKNCDFQMERY+FKRRNDGIYIINLGK
Sbjct: 1 MATATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGK 60
Query: 254 TWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQ 433
TWEKLQLAARVIVAIENP+DIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQLQ
Sbjct: 61 TWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ 120
Query: 434 TSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGC 613
TSF+EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGC
Sbjct: 121 TSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGC 180
Query: 614 LFWLLARMVLQMRGSVRPGHKWDVMVDLFFYREPEEAKQQEEEEAVQAPEYIE--YSGGL 787
LFWLLARMVLQMRG++RPG KWDVMVDLFFYREPEEAKQQEEEEA I +G +
Sbjct: 181 LFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNAGAI 240
Query: 788 GGD-QWPTQIADASWSADAAPAIPAVPAAGWTA---EPGVAQEGWDAAPAPVVAAPILED 955
D QWP I D SWS IPAVP W A P A W A P P+
Sbjct: 241 AADGQWPGTI-DQSWSDAVPQPIPAVPGVNWGAPAEAPAAAGGDWGEAVPPPQQIPVPPS 299
Query: 956 GAPVV-ASGWD 985
G V SGWD
Sbjct: 300 GIDTVQPSGWD 310
>gi|125544237|gb|EAY90376.1| hypothetical protein OsI_011609 [Oryza sativa
(indica cultivar-group)]
Length = 310
Score = 455 bits (1168), Expect = 6e-126
Identities = 230/308 (74%), Positives = 249/308 (80%), Gaps = 11/308 (3%)
Frame = +2
Query: 80 AMATTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTW 259
A A PR LSQ+E DIQMMLAA+VHLGTKNCDFQMERYV+KRR+DGI+IINLGKTW
Sbjct: 2 AAAAAGGGAPRALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRSDGIFIINLGKTW 61
Query: 260 EKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQTS 439
EKLQLAARVIVAIENP+DIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQLQTS
Sbjct: 62 EKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS 121
Query: 440 FNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLF 619
F+EPRLLILTDPRTDHQPIKE+ALGNIPTIAFCDTDSPMRYVDIGIPANNKGK SIGCLF
Sbjct: 122 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 181
Query: 620 WLLARMVLQMRGSVRPGHKWDVMVDLFFYREPEEAKQQEEEEAVQAPEY--IEYSGGLGG 793
WLLARMVLQMRG++ PGHKWDVMVDLFFYR+PEEAK+QEEEEA PEY + G
Sbjct: 182 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAAVGPEYAAVAEYGAAPT 241
Query: 794 DQWPTQIADASWSADA-APAIPAVPAAGWTAEPG-VAQEGWDAAPAPVVAAPILEDGAPV 967
D W D W + PA+PA P W A P VA EGWDA P AA + AP
Sbjct: 242 DNW----GDQQWGGEVQPPALPAAPTGEWGAAPAPVAAEGWDAVAVPPAAAAAV---APP 294
Query: 968 VASGWD*G 991
A GW+ G
Sbjct: 295 AAPGWEEG 302
>gi|118481301|gb|ABK92594.1| unknown [Populus trichocarpa]
Length = 312
Score = 454 bits (1167), Expect = 8e-126
Identities = 231/305 (75%), Positives = 250/305 (81%), Gaps = 9/305 (2%)
Frame = +2
Query: 86 ATTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEK 265
A T APPR+LSQKEADIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEK
Sbjct: 7 AGATPAPPRELSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEK 66
Query: 266 LQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQTSFN 445
L LAARVIVAIENP+DIIVQSARPYGQRAVLKFAQ+TGA+ IAGRHTPGTFTNQLQTSF+
Sbjct: 67 LLLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHPIAGRHTPGTFTNQLQTSFS 126
Query: 446 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWL 625
EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMR+VDIGIPANNKGKHSIGCLFWL
Sbjct: 127 EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWL 186
Query: 626 LARMVLQMRGSVRPGHKWDVMVDLFFYREPEEAKQQEEEEAVQAPEYI----EYSGGLGG 793
LARMVLQMRG++RPGHKWDVMVDLFFYREPEE K EEE+ V +Y +Y GG
Sbjct: 187 LARMVLQMRGTIRPGHKWDVMVDLFFYREPEEVKPPEEEDVVAPVDYALTGPDYMGG-AA 245
Query: 794 DQWPTQIADASWSADAAPAIPAVP-AAGWTAE--PGVAQEGWDAAPAPVVAAPILEDGAP 964
D W T +AD+ W+ +A P IPA P WT + G W AA AP P + +
Sbjct: 246 DSWSTPVADSGWTNEALP-IPAAPVTTSWTPDQAAGGLDPDWGAAAAPPPPPPPQQTASA 304
Query: 965 VVASG 979
VV G
Sbjct: 305 VVDEG 309
>gi|147782664|emb|CAN61790.1| hypothetical protein [Vitis vinifera]
Length = 312
Score = 453 bits (1163), Expect = 2e-125
Identities = 233/305 (76%), Positives = 245/305 (80%), Gaps = 27/305 (8%)
Frame = +2
Query: 98 AAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLA 277
A P R LSQKE DIQMMLAAEVHLGTKNC+FQMERYVFKRRNDGIYIINLGKTWEKLQLA
Sbjct: 2 ATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLA 61
Query: 278 ARVIVAIENPKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQTSFNEPRL 457
ARVIVAIENPKDIIVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQLQTSF+EPRL
Sbjct: 62 ARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 121
Query: 458 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 637
LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM
Sbjct: 122 LILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARM 181
Query: 638 VLQMRGSVRPGHKWDVMVDLFFYREPEEAKQQEEEEAVQAPEY--IEYS----GGLGGDQ 799
VLQMR ++ PGHKWDVMVDLFFYREPEE K+QE +E V AP+Y +Y GGLGG
Sbjct: 182 VLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGD 241
Query: 800 WPTQIADA-SWSAD--AAPAIPAVPAAGWTAEPGVAQEGWDAAPAPVVAAPILEDGAPVV 970
W I DA W AD A IPAVP + W DAAP P P+
Sbjct: 242 WGAPITDAPQWGADVPAVAPIPAVPGSNW----------GDAAPMP--------SAVPIA 283
Query: 971 ASGWD 985
GWD
Sbjct: 284 TDGWD 288
>gi|118481845|gb|ABK92859.1| unknown [Populus trichocarpa]
Length = 316
Score = 451 bits (1158), Expect = 9e-125
Identities = 230/299 (76%), Positives = 251/299 (83%), Gaps = 13/299 (4%)
Frame = +2
Query: 83 MATTT----AAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLG 250
MAT T AAP R LSQKE DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLG
Sbjct: 1 MATATGAAAAAPTRALSQKELDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLG 60
Query: 251 KTWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQL 430
KTWEKL LAARVIVAIENP+D+IVQSARPYGQRAVLKFAQ+TGA+AIAGRHTPGTFTNQ+
Sbjct: 61 KTWEKLLLAARVIVAIENPQDMIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQM 120
Query: 431 QTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIG 610
QTSF+EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPM +VDIGIPANNKGKHSIG
Sbjct: 121 QTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNFVDIGIPANNKGKHSIG 180
Query: 611 CLFWLLARMVLQMRGSVRPGHKWDVMVDLFFYREPEEAKQQEEEEAVQAPEYI----EYS 778
CLFWLLARMVLQMRG++ GHKWD+MVDLFFYREPEEAKQQEEE+A+ A +Y +Y
Sbjct: 181 CLFWLLARMVLQMRGTIPQGHKWDIMVDLFFYREPEEAKQQEEEDALPAADYALPPPDY- 239
Query: 779 GGLGGDQWPTQIADASWSADAAPAIPAVPAAGWTAEPGVAQEGWDAAPAPVVA-APILE 952
G+ +W + IAD+ W+ D A +PAA + E GV W AAPAP A AP E
Sbjct: 240 -GISAGEWGSTIADSQWTTDVAQ--QPIPAANFFPEQGVLSGEWGAAPAPAPAPAPAAE 295
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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