BLASTX 7.6.2
Query= RU03273 /QuerySize=684
(683 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 277 5e-073
gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 273 7e-072
gi|7387726|sp|O22582|H2B_GOSHI Histone H2B 269 1e-070
gi|118489629|gb|ABK96616.1| unknown [Populus trichocarpa x Popul... 267 9e-070
gi|15226943|ref|NP_180440.1| histone H2B, putative [Arabidopsis ... 250 7e-065
>gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1
Length = 148
Score = 277 bits (708), Expect = 5e-073
Identities = 141/148 (95%), Positives = 146/148 (98%)
Frame = +2
Query: 71 MAPKAEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVET 250
MAPK EKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKE G+AAG+KKKKR+KKSVET
Sbjct: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60
Query: 251 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 430
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
Query: 431 AVRLVLPGELAKHAVSEGTKAVTKFTST 514
AVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
>gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2
Length = 148
Score = 273 bits (698), Expect = 7e-072
Identities = 139/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 71 MAPKAEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVET 250
MAPK EKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKE G+AAG+KKKKR+KKSVET
Sbjct: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60
Query: 251 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 430
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSREIQT
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120
Query: 431 AVRLVLPGELAKHAVSEGTKAVTKFTST 514
AVRLVLPGELAKH VSEGTKAVTKFTS+
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148
>gi|7387726|sp|O22582|H2B_GOSHI Histone H2B
Length = 147
Score = 269 bits (687), Expect = 1e-070
Identities = 140/147 (95%), Positives = 144/147 (97%), Gaps = 1/147 (0%)
Frame = +2
Query: 74 APKAEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVETY 253
APKAEKKPAEKKPAEEKK+ VAEKAPAEKKPKAGKKLPKE GAAAGDKKKKR KKSVETY
Sbjct: 2 APKAEKKPAEKKPAEEKKA-VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60
Query: 254 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 433
KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120
Query: 434 VRLVLPGELAKHAVSEGTKAVTKFTST 514
VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147
>gi|118489629|gb|ABK96616.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 148
Score = 267 bits (680), Expect = 9e-070
Identities = 141/149 (94%), Positives = 144/149 (96%), Gaps = 2/149 (1%)
Frame = +2
Query: 71 MAPKAEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEAGAA-AGDKKKKRNKKSVE 247
MAP+AEKKPAEKKPAEEKK TVAEKAPAEKKPKAGKKLPKE GAA AGDKKKKR KKS E
Sbjct: 1 MAPRAEKKPAEKKPAEEKK-TVAEKAPAEKKPKAGKKLPKEGGAAVAGDKKKKRVKKSTE 59
Query: 248 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQ 427
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQ
Sbjct: 60 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 119
Query: 428 TAVRLVLPGELAKHAVSEGTKAVTKFTST 514
TAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 120 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
>gi|15226943|ref|NP_180440.1| histone H2B, putative [Arabidopsis thaliana]
Length = 151
Score = 250 bits (638), Expect = 7e-065
Identities = 132/151 (87%), Positives = 138/151 (91%), Gaps = 3/151 (1%)
Frame = +2
Query: 71 MAPKAEKKPAEKKPAEE---KKSTVAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKS 241
MAPKA KKPAEKKPAE+ ++ VAEKAPAEKKPKAGKKLPKEA +KKKKR KKS
Sbjct: 1 MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60
Query: 242 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 421
ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61 TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
Query: 422 IQTAVRLVLPGELAKHAVSEGTKAVTKFTST 514
IQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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