BLASTX 7.6.2
Query= RU03364 /QuerySize=1106
(1105 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|118484193|gb|ABK93977.1| unknown [Populus trichocarpa] 130 2e-028
gi|73919938|sp|Q6V9I6.1|HDT1_SOLCH RecName: Full=Histone deacety... 115 1e-023
gi|156102985|ref|XP_001617185.1| Mitotic apparatus protein p62 [... 80 4e-013
gi|158295035|ref|XP_001688755.1| AGAP005940-PA [Anopheles gambia... 76 4e-012
gi|158295037|ref|XP_315971.4| AGAP005940-PB [Anopheles gambiae s... 76 4e-012
>gi|118484193|gb|ABK93977.1| unknown [Populus trichocarpa]
Length = 305
Score = 130 bits (326), Expect = 2e-028
Identities = 83/188 (44%), Positives = 115/188 (61%), Gaps = 18/188 (9%)
Frame = -3
Query: 758 KMIMPDQPNQR*VLRKLRKKIKSDQKDSSSDDDDDDESEDEEFDQVKSVEDGSEDDEES- 582
K P+ N K + KI KD ++DD S++E+ S +DG D+++
Sbjct: 125 KQPKPENENAAKPDSKQKVKIVEPNKDGKPKPENDDSSDEED----DSSDDGESSDDQAM 180
Query: 581 --SDDDDDDSEDEDDDSEEENEETPNKSDSLTMKLFKVDGSNKRAAES-SKTPV-QKKAK 414
++D+D+ SEDEDD+S+E+++++ + D T K K + KR+AES SK PV KKAK
Sbjct: 181 MMANDEDESSEDEDDESDEDDDDS-DDGDVKTPK--KAEVGKKRSAESASKNPVPDKKAK 237
Query: 413 FVTPEKTSGKKGAVHTATPYPSKQALKRPANTDQTKLQSSKSSGGGTFRCDPCNRSFNSD 234
FVTP+KT KK VH ATP+PSKQA K AN+ Q K Q+ KS F C+ CNRSF S+
Sbjct: 238 FVTPQKTDLKKAGVHIATPHPSKQAAKTSANS-QRKEQAQKS-----FSCNSCNRSFGSE 291
Query: 233 GALQSHTK 210
ALQSH+K
Sbjct: 292 NALQSHSK 299
>gi|73919938|sp|Q6V9I6.1|HDT1_SOLCH RecName: Full=Histone deacetylase HDT1;
AltName: Full=Histone deacetylase 2a; Short=HD2a; AltName: Full=ScHD2a
Length = 269
Score = 115 bits (286), Expect = 1e-023
Identities = 62/157 (39%), Positives = 89/157 (56%), Gaps = 25/157 (15%)
Frame = -3
Query: 695 KSDQKDSSSDDDDDDESEDEEFDQVKSVEDGSEDDEESSDDDDDDSEDEDDDSEEENEET 516
K + K++ + D + ++ +V+ VE +D++ESSDDDD D +++DDS++ EET
Sbjct: 124 KPEPKEAGKSNAGKDSASGKQ--KVRIVEPTKDDEDESSDDDDSDMGEDEDDSDDSEEET 181
Query: 515 PNKSDSLTMKLFKVDGSNKRAAESSKTPV-QKKAKFVTPEKTSGKKGAVHTATPYPSKQA 339
P K++ ++A ++KTPV KKAK TP+KT GKKG H ATP+PSKQA
Sbjct: 182 PKKAE---------PAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQA 232
Query: 338 LKRPANTDQTKLQSSKSSGGGTFRCDPCNRSFNSDGA 228
K P G+ C PCNRSF S+GA
Sbjct: 233 SKTP-------------KSAGSHHCKPCNRSFGSEGA 256
>gi|156102985|ref|XP_001617185.1| Mitotic apparatus protein p62 [Plasmodium
vivax SaI-1]
Length = 318
Score = 80 bits (195), Expect = 4e-013
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Frame = -3
Query: 689 DQKDSSSDDDDDDESEDEEFDQVKSVEDGSEDDEESSDDDDDDSEDEDDDSEEENEETPN 510
D +D DDDDDD+ EDEE + ED +DD+E DD+DD+ ++EDDD E++++ T N
Sbjct: 165 DDEDDEDDDDDDDDDEDEEGEDDDDDEDDEDDDDEEDDDEDDEEDEEDDDDEDDDDGTKN 224
Query: 509 KSDSLTMKLFKVDGSNKRAAESSKTPVQKKAK 414
K D K NKRA ++ KK+K
Sbjct: 225 KGDK--KKNGPKKNKNKRALDNKNDGPSKKSK 254
>gi|158295035|ref|XP_001688755.1| AGAP005940-PA [Anopheles gambiae str. PEST]
Length = 879
Score = 76 bits (186), Expect = 4e-012
Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Frame = -3
Query: 716 RKLRKKIKSDQKD---SSSDDDDDDESEDEEFDQVKSVEDGSEDDEESSDDDDDDSEDED 546
+K KK +D+ D + +++++D+ +DEE D + E+ + EE DDDDD+ E++D
Sbjct: 108 KKKTKKAAADKTDGDNAKEEEEEEDDDDDEENDAKEDEEELDDPMEEDDDDDDDEEEEDD 167
Query: 545 DDSEEENEETPNKSDSLTMKLFKVDGSNKRAAESSKTPVQKKAKFVTPEKTSGKKGAVHT 366
D+ E+++EE + + K K + AA K +K A P K K A T
Sbjct: 168 DEEEDDDEEEQGRRSNKRTKKTKASSAKGGAAGKKKVVAKKAAVAKQPPKKKAKTAATTT 227
Query: 365 ATPYPSKQALKRPANTDQTKLQSS 294
T K+ ++P ++ K +++
Sbjct: 228 PTAAEKKEGAEKPTAAEKKKKKAA 251
>gi|158295037|ref|XP_315971.4| AGAP005940-PB [Anopheles gambiae str. PEST]
Length = 790
Score = 76 bits (186), Expect = 4e-012
Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Frame = -3
Query: 716 RKLRKKIKSDQKD---SSSDDDDDDESEDEEFDQVKSVEDGSEDDEESSDDDDDDSEDED 546
+K KK +D+ D + +++++D+ +DEE D + E+ + EE DDDDD+ E++D
Sbjct: 108 KKKTKKAAADKTDGDNAKEEEEEEDDDDDEENDAKEDEEELDDPMEEDDDDDDDEEEEDD 167
Query: 545 DDSEEENEETPNKSDSLTMKLFKVDGSNKRAAESSKTPVQKKAKFVTPEKTSGKKGAVHT 366
D+ E+++EE + + K K + AA K +K A P K K A T
Sbjct: 168 DEEEDDDEEEQGRRSNKRTKKTKASSAKGGAAGKKKVVAKKAAVAKQPPKKKAKTAATTT 227
Query: 365 ATPYPSKQALKRPANTDQTKLQSS 294
T K+ ++P ++ K +++
Sbjct: 228 PTAAEKKEGAEKPTAAEKKKKKAA 251
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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