BLASTX 7.6.2
Query= RU03466 /QuerySize=1422
(1421 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|118482060|gb|ABK92961.1| unknown [Populus trichocarpa] 293 4e-077
gi|15233491|ref|NP_194648.1| zinc finger (CCCH-type) family prot... 277 3e-072
gi|147865633|emb|CAN83255.1| hypothetical protein [Vitis vinifera] 266 5e-069
gi|157339222|emb|CAO43763.1| unnamed protein product [Vitis vini... 266 5e-069
gi|147857018|emb|CAN81808.1| hypothetical protein [Vitis vinifera] 248 1e-063
>gi|118482060|gb|ABK92961.1| unknown [Populus trichocarpa]
Length = 384
Score = 293 bits (748), Expect = 4e-077
Identities = 133/199 (66%), Positives = 154/199 (77%), Gaps = 3/199 (1%)
Frame = -1
Query: 1379 PTLKVAPWDPFDDPTSGLGSPFSVRSPSANAGFLDSLSALHRFLPSNESD-SLSDDPDMP 1203
PT+++ WDP+DD T+ SP N LDSL+ALHR+LPSNE D S D+ D+P
Sbjct: 13 PTVQIPQWDPYDDQTTSPSPSTIPSSPFTNFNALDSLTALHRYLPSNEPDPSFEDELDLP 72
Query: 1202 L--ISCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKG 1029
+ SCD FRM+ FKVRRC RGRSHDWTECPYAHPGEKARRRDP++YHYSG+ACP+FRKG
Sbjct: 73 VDAFSCDHFRMYVFKVRRCGRGRSHDWTECPYAHPGEKARRRDPQRYHYSGTACPEFRKG 132
Query: 1028 NCAKGDSCEFAHGVFECWLHPARYRTQPCKDGLACHRRVCFFAHTPEQLRVLPGHSPRTH 849
C KGDSCEFAHGVFECWLHPARYRTQPCKDG AC RRVCFFAHTPEQLR+LP HSP+ +
Sbjct: 133 GCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPACRRRVCFFAHTPEQLRLLPQHSPKGN 192
Query: 848 GPGFFDSPTSPPISPPSDS 792
G G ++ + P DS
Sbjct: 193 GSGSWELDFGSLVMHPLDS 211
>gi|15233491|ref|NP_194648.1| zinc finger (CCCH-type) family protein
[Arabidopsis thaliana]
Length = 356
Score = 277 bits (706), Expect = 3e-072
Identities = 147/273 (53%), Positives = 173/273 (63%), Gaps = 22/273 (8%)
Frame = -1
Query: 1409 MMLGEPSRLAPTLKVAPWDPFDDPTSGLGSPFSVRSPSANAGFLDSLSALHRFLPSNESD 1230
MM+GE R PT+++ PW ++ T+ FS S + L++L+ L R+LPSNE D
Sbjct: 1 MMIGETRRTYPTVEIPPWPVLEELTT--SEFFSPVMNSPDCSMLEALAGLQRYLPSNEPD 58
Query: 1229 SLSD----DPDMPL--ISCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKY 1068
S PD P+ SCD FRM++FKVRRCARGRSHDWTECPYAHPGEKARRRDPRKY
Sbjct: 59 PESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKY 118
Query: 1067 HYSGSACPDFRKGNCAKGDSCEFAHGVFECWLHPARYRTQPCKDGLACHRRVCFFAHTPE 888
HYSG+ACPDFRKG C KGDSCEFAHGVFECWLHPARYRTQPCKDG C R++CFFAH+P+
Sbjct: 119 HYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPD 178
Query: 887 QLRVLPGHSPRTHGPGFFDSPTSP-----PISPPSDSPPMSPNSPQLRLNSVSELVASMR 723
QLR L SP SP ISP S SPPMSP R +S S +
Sbjct: 179 QLRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSP-----RADSESSPMTQSL 233
Query: 722 NFKLAKMQMSTTPPSWVGSGFGS----PRGPPL 636
+ L ++ PS+ F S PR PL
Sbjct: 234 SRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPL 266
>gi|147865633|emb|CAN83255.1| hypothetical protein [Vitis vinifera]
Length = 426
Score = 266 bits (678), Expect = 5e-069
Identities = 136/228 (59%), Positives = 156/228 (68%), Gaps = 17/228 (7%)
Frame = -1
Query: 1340 PTSGLGSPFSVRSPSANAGFLDSLSALHRFLPSNESDSLSDDPDMPLI---SCDQFRMFE 1170
PT G +PF + ++ S+L R+LPSNE + S D ++ SCDQFRMFE
Sbjct: 93 PTGGDYNPFIIS---------EAFSSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFE 143
Query: 1169 FKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGNCAKGDSCEFAHG 990
FKVRRCARGRSHDWTECPYAHPGEKARRRDPRK+HYSG+ACP+FRKGNC KGDSCEFAHG
Sbjct: 144 FKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHG 203
Query: 989 VFECWLHPARYRTQPCKDGLACHRRVCFFAHTPEQLRVLPGHSPRTHGPGFFDSPTSPPI 810
VFECWLHPARYRTQPCKDG C RRVCFFAHTPEQLRVLP SPR HG +S P+
Sbjct: 204 VFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRVLPQQSPRNHGSA--ESYDGSPL 261
Query: 809 SPPSDSPPMSPNSPQLRLNSVSELVASMRNFKLAKMQMSTTPPSWVGS 666
D P +S S + S L++ + MS PS+ GS
Sbjct: 262 RLAFD-PYLSKGS--FISSPTSTLISPPVSPPSDSPPMSPNSPSFTGS 306
>gi|157339222|emb|CAO43763.1| unnamed protein product [Vitis vinifera]
Length = 379
Score = 266 bits (678), Expect = 5e-069
Identities = 136/228 (59%), Positives = 156/228 (68%), Gaps = 17/228 (7%)
Frame = -1
Query: 1340 PTSGLGSPFSVRSPSANAGFLDSLSALHRFLPSNESDSLSDDPDMPLI---SCDQFRMFE 1170
PT G +PF + ++ S+L R+LPSNE + S D ++ SCDQFRMFE
Sbjct: 46 PTGGDYNPFIIS---------EAFSSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFE 96
Query: 1169 FKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGNCAKGDSCEFAHG 990
FKVRRCARGRSHDWTECPYAHPGEKARRRDPRK+HYSG+ACP+FRKGNC KGDSCEFAHG
Sbjct: 97 FKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHG 156
Query: 989 VFECWLHPARYRTQPCKDGLACHRRVCFFAHTPEQLRVLPGHSPRTHGPGFFDSPTSPPI 810
VFECWLHPARYRTQPCKDG C RRVCFFAHTPEQLRVLP SPR HG +S P+
Sbjct: 157 VFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRVLPQQSPRNHGSA--ESYDGSPL 214
Query: 809 SPPSDSPPMSPNSPQLRLNSVSELVASMRNFKLAKMQMSTTPPSWVGS 666
D P +S S + S L++ + MS PS+ GS
Sbjct: 215 RLAFD-PYLSKGS--FISSPTSTLISPPVSPPSDSPPMSPNSPSFTGS 259
>gi|147857018|emb|CAN81808.1| hypothetical protein [Vitis vinifera]
Length = 460
Score = 248 bits (631), Expect = 1e-063
Identities = 113/146 (77%), Positives = 122/146 (83%), Gaps = 4/146 (2%)
Frame = -1
Query: 1241 NESDSLSDDPDMPL--ISCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKY 1068
++SD + D+P+ SCD FRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRK+
Sbjct: 118 SDSDISGREADIPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKF 177
Query: 1067 HYSGSACPDFRKGNCAKGDSCEFAHGVFECWLHPARYRTQPCKDGLACHRRVCFFAHTPE 888
HYSG+ACPDFRKGNC KGDSCEFAHGVFECWLHPARYRTQPCKDG C RRVCFFAHT E
Sbjct: 178 HYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPNCRRRVCFFAHTAE 237
Query: 887 QLRVLPGHSPRTHGPGFFDSPTSPPI 810
QLRVLP SPRT PG +S P+
Sbjct: 238 QLRVLPQQSPRT--PGSVESYDGSPL 261
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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