BLASTX 7.6.2
Query= RU03607 /QuerySize=1166
(1165 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15223786|ref|NP_172903.1| PHD finger family protein [Arabidop... 433 1e-119
gi|116563479|gb|ABJ99762.1| PHD5 [Medicago truncatula] 428 4e-118
gi|12651665|gb|AAA20093.2| Alfin-1 [Medicago sativa] 426 2e-117
gi|194694074|gb|ACF81121.1| unknown [Zea mays] 382 3e-104
gi|116786702|gb|ABK24207.1| unknown [Picea sitchensis] 371 8e-101
>gi|15223786|ref|NP_172903.1| PHD finger family protein [Arabidopsis thaliana]
Length = 252
Score = 433 bits (1113), Expect = 1e-119
Identities = 203/251 (80%), Positives = 225/251 (89%), Gaps = 3/251 (1%)
Frame = +3
Query: 369 MEGIPHPVPRTVEEVFSDFRGRRAGLIKALTTDVQKFYQQCDPEKENLCLYGLPNEAWEV 548
MEGI HP+PRTVEEVFSDFRGRRAGLIKAL+TDVQKFY QCDPEKENLCLYGLPNE WEV
Sbjct: 1 MEGIQHPIPRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEV 60
Query: 549 NLPVEEVPPELPEPALGINFARDGMAEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNER 728
NLPVEEVPPELPEPALGINFARDGM EKDW+SLVAVHSDSWL++VAFYFGARFGFGKNER
Sbjct: 61 NLPVEEVPPELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNER 120
Query: 729 KKLFQMINDLPTIFEVVTGNVRQPMNQSGIHHNSSKSKSSGKPSRQPEINPSKGVKMSPL 908
K+LFQMINDLPTIFEVVTGN +Q +QS +HNSS+SKSSG R E + +K KMSP
Sbjct: 121 KRLFQMINDLPTIFEVVTGNAKQSKDQSA-NHNSSRSKSSGGKPRHSE-SHTKASKMSPP 178
Query: 909 AKEDEESGEEEEEDDEQGATCGACGDNYGADEFWICCDVCERWFHGKCVKITPAKAEHIK 1088
++++ESG +E+EDDEQGA CGACGDNYG DEFWICCD CE+WFHGKCVKITPAKAEHIK
Sbjct: 179 PRKEDESG-DEDEDDEQGAVCGACGDNYGGDEFWICCDACEKWFHGKCVKITPAKAEHIK 237
Query: 1089 QYKCPSCSSKR 1121
YKCPSC++ +
Sbjct: 238 HYKCPSCTTSK 248
>gi|116563479|gb|ABJ99762.1| PHD5 [Medicago truncatula]
Length = 264
Score = 428 bits (1100), Expect = 4e-118
Identities = 203/247 (82%), Positives = 221/247 (89%), Gaps = 4/247 (1%)
Frame = +3
Query: 384 HPVPRTVEEVFSDFRGRRAGLIKALTTDVQKFYQQCDPEKENLCLYGLPNEAWEVNLPVE 563
HPVPRTVEEVFSD++GRRAGLIKALTTDV+KFYQ CDPEKENLCLYG PNE WEVNLPVE
Sbjct: 4 HPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVE 63
Query: 564 EVPPELPEPALGINFARDGMAEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQ 743
EVPPELPEPALGINFARDGM EKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQ
Sbjct: 64 EVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQ 123
Query: 744 MINDLPTIFEVVTGNVRQPMNQSGIHHN--SSKSKSSGKPSRQPEINPSKGVKMSPLAKE 917
MINDLPT+FE+ TG +Q +Q H+N +SK KSSGK SRQ E + +KGVKMS KE
Sbjct: 124 MINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGK-SRQSE-SQTKGVKMSAPVKE 181
Query: 918 DEESGEEEEEDDEQGATCGACGDNYGADEFWICCDVCERWFHGKCVKITPAKAEHIKQYK 1097
+ +SGEEEE+DDEQGATCGACGDNYG DEFWICCD+CE+WFHGKCVKITPAKAEHIKQYK
Sbjct: 182 EVDSGEEEEDDDEQGATCGACGDNYGXDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYK 241
Query: 1098 CPSCSSK 1118
CP CS K
Sbjct: 242 CPGCSIK 248
>gi|12651665|gb|AAA20093.2| Alfin-1 [Medicago sativa]
Length = 257
Score = 426 bits (1094), Expect = 2e-117
Identities = 207/258 (80%), Positives = 227/258 (87%), Gaps = 6/258 (2%)
Frame = +3
Query: 369 MEGI-PHPVPRTVEEVFSDFRGRRAGLIKALTTDVQKFYQQCDPEKENLCLYGLPNEAWE 545
MEG+ HPVPRTVEEVFSD++GRRAGLIKALTTDV+KFYQ DPEKENLCLYG PNE WE
Sbjct: 1 MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWE 60
Query: 546 VNLPVEEVPPELPEPALGINFARDGMAEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNE 725
VNLPVEEVPPELPEPALGINFARDGM EKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+
Sbjct: 61 VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKND 120
Query: 726 RKKLFQMINDLPTIFEVVTGNVRQPMNQSGIHHN--SSKSKSSGKPSRQPEINPSKGVKM 899
RK+LFQMINDLPT+FE+ TG +Q +Q H+N +SK KSSGK SRQ E + +KGVKM
Sbjct: 121 RKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGK-SRQSE-SQTKGVKM 178
Query: 900 SPLAKEDEESGEEEEE-DDEQGATCGACGDNYGADEFWICCDVCERWFHGKCVKITPAKA 1076
S KE+ +SGEEEEE DDEQGATCGACGDNYG DEFWICCD+CE+WFHGKCVKITPAKA
Sbjct: 179 SAPVKEEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKA 238
Query: 1077 EHIKQYKCPSCSSKRARV 1130
EHIKQYKCP CS K+ R+
Sbjct: 239 EHIKQYKCPGCSIKKPRI 256
>gi|194694074|gb|ACF81121.1| unknown [Zea mays]
Length = 254
Score = 382 bits (981), Expect = 3e-104
Identities = 182/247 (73%), Positives = 201/247 (81%), Gaps = 4/247 (1%)
Frame = +3
Query: 396 RTVEEVFSDFRGRRAGLIKALTTDVQKFYQQCDPEKENLCLYGLPNEAWEVNLPVEEVPP 575
RT E+VF DFR RRAG+IKALTTDV+KFYQQCDPEKENLCLYGLPNE WEVNLP EEVPP
Sbjct: 8 RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPAEEVPP 67
Query: 576 ELPEPALGINFARDGMAEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMIND 755
ELPEPALGINFARDGM EKDWLSLVAVHSD+WLLAVAFYFGARFGF K RK+LF MIN+
Sbjct: 68 ELPEPALGINFARDGMDEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKESRKRLFVMINN 127
Query: 756 LPTIFEVVTGNVRQPMNQSGIHHNSSKSKSSGKPSRQPEINPSKGVKMSPLAKEDEESG- 932
LPTI+EVVTG ++ + +S +K+ KP RQPE N S+G KM P ED+ G
Sbjct: 128 LPTIYEVVTGTAKKQTKEKTPKSSSKSNKAGPKPPRQPEPN-SRGSKMPPPKDEDDSGGE 186
Query: 933 EEEEEDDEQGATCGACGDNYGADEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSC- 1109
EEEEE+D + CG+CGDNYG DEFWICCD CE WFHGKCVKITPAKAEHIK YKCP+C
Sbjct: 187 EEEEEEDHENTLCGSCGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNCS 246
Query: 1110 -SSKRAR 1127
S KRAR
Sbjct: 247 GSGKRAR 253
>gi|116786702|gb|ABK24207.1| unknown [Picea sitchensis]
Length = 257
Score = 371 bits (951), Expect = 8e-101
Identities = 181/258 (70%), Positives = 212/258 (82%), Gaps = 7/258 (2%)
Frame = +3
Query: 369 MEGIPHP-VPRTVEEVFSDFRGRRAGLIKALTTDVQKFYQQCDPEKENLCLYGLPNEAWE 545
MEG P R+VEEVF DF+GRRAG+IKALTTDV+ FYQQCDPEKENLCLYGLP E WE
Sbjct: 1 MEGAAGPHNGRSVEEVFKDFKGRRAGMIKALTTDVELFYQQCDPEKENLCLYGLPIETWE 60
Query: 546 VNLPVEEVPPELPEPALGINFARDGMAEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNE 725
VNLP EEVPPELPEPALGINFARDGM EKDWLSLVAVHSD+WLLAVAFYFGARFGF KN+
Sbjct: 61 VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFEKND 120
Query: 726 RKKLFQMINDLPTIFEVVTGNVRQPMNQ--SGIHHNSSKSKSSGKPSRQPEINPSKGVKM 899
R++LF MIN+LPTIFEVVTG V++ + S I+HN +KSK + K + + +K K+
Sbjct: 121 RRRLFNMINELPTIFEVVTGTVKKQTKEKSSVINHNGNKSKPNAK--LRVSESQTKVSKL 178
Query: 900 SPLAKEDEESGEEEEEDDEQGATCGACGDNYGADEFWICCDVCERWFHGKCVKITPAKAE 1079
P KE++++ +EE+E++ A CGACG+ Y +DEFWICCD+CE WFHGKCVKITPA+AE
Sbjct: 179 PPPPKEEDDTLDEEDEEEHGDALCGACGEYYASDEFWICCDMCEVWFHGKCVKITPARAE 238
Query: 1080 HIKQYKCPSCSS--KRAR 1127
HIKQYKCPSCSS KRAR
Sbjct: 239 HIKQYKCPSCSSSTKRAR 256
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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