BLASTX 7.6.2
Query= RU03867 /QuerySize=673
(672 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7387726|sp|O22582|H2B_GOSHI Histone H2B 267 7e-070
gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 266 1e-069
gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 262 2e-068
gi|15226943|ref|NP_180440.1| histone H2B, putative [Arabidopsis ... 255 3e-066
gi|158053020|dbj|BAF81889.1| histone H2B [Nicotiana tabacum] 247 7e-064
>gi|7387726|sp|O22582|H2B_GOSHI Histone H2B
Length = 147
Score = 267 bits (681), Expect = 7e-070
Identities = 140/147 (95%), Positives = 141/147 (95%), Gaps = 1/147 (0%)
Frame = -3
Query: 607 MAPKAEKKPAEKKPA-EKAPAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVETY 431
MAPKAEKKPAEKKPA EK AEKAPAEKKPKAGKKLPKE GAAAGDKKKKR KKSVETY
Sbjct: 1 MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60
Query: 430 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 251
KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTA
Sbjct: 61 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120
Query: 250 VRLVLPGELAKHAVSEGTKAVTKFTSS 170
VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147
>gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1
Length = 148
Score = 266 bits (678), Expect = 1e-069
Identities = 138/148 (93%), Positives = 142/148 (95%), Gaps = 2/148 (1%)
Frame = -3
Query: 607 MAPKAEKKPAEKKPAE--KAPAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVET 434
MAPK EKKPAEKKPAE K+ AEKAPAEKKPKAGKKLPKE G+AAG+KKKKR+KKSVET
Sbjct: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60
Query: 433 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 254
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
Query: 253 AVRLVLPGELAKHAVSEGTKAVTKFTSS 170
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
>gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2
Length = 148
Score = 262 bits (668), Expect = 2e-068
Identities = 136/148 (91%), Positives = 140/148 (94%), Gaps = 2/148 (1%)
Frame = -3
Query: 607 MAPKAEKKPAEKKPAE--KAPAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVET 434
MAPK EKKPAEKKPAE K+ AEKAPAEKKPKAGKKLPKE G+AAG+KKKKR+KKSVET
Sbjct: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60
Query: 433 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 254
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESSRLARYNKKPTITSREIQT
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120
Query: 253 AVRLVLPGELAKHAVSEGTKAVTKFTSS 170
AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148
>gi|15226943|ref|NP_180440.1| histone H2B, putative [Arabidopsis thaliana]
Length = 151
Score = 255 bits (650), Expect = 3e-066
Identities = 135/151 (89%), Positives = 138/151 (91%), Gaps = 5/151 (3%)
Frame = -3
Query: 607 MAPKAEKKPAEKKPAEKAPA-----AEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKS 443
MAPKA KKPAEKKPAEKAPA AEKAPAEKKPKAGKKLPKEA +KKKKR KKS
Sbjct: 1 MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60
Query: 442 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 263
ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61 TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
Query: 262 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 170
IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
>gi|158053020|dbj|BAF81889.1| histone H2B [Nicotiana tabacum]
Length = 141
Score = 247 bits (629), Expect = 7e-064
Identities = 127/137 (92%), Positives = 130/137 (94%)
Frame = -3
Query: 580 AEKKPAEKAPAAEKAPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVETYKIYIFKVLKQ 401
AEKKPAEK PA EKAPAEKKPKAGKKLP + GA+ DKKKK+ KKSVETYKIYIFKVLKQ
Sbjct: 5 AEKKPAEKKPAEEKAPAEKKPKAGKKLPAKDGASGADKKKKKAKKSVETYKIYIFKVLKQ 64
Query: 400 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 221
VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA
Sbjct: 65 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 124
Query: 220 KHAVSEGTKAVTKFTSS 170
KHAVSEGTKAVTKFTSS
Sbjct: 125 KHAVSEGTKAVTKFTSS 141
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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