BLASTX 7.6.2
Query= RU04335 /QuerySize=852
(851 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|123379|sp|P26585.1|HMGL_SOYBN HMG1/2-like protein (Protein SB11) 206 2e-051
gi|145323960|ref|NP_001077569.1| HMGB2 (HIGH MOBILITY GROUP B 2)... 188 8e-046
gi|18394898|ref|NP_564123.1| HMGB2 (HIGH MOBILITY GROUP B 2); tr... 187 1e-045
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis ... 184 9e-045
gi|79318286|ref|NP_001031074.1| HMGB2 (HIGH MOBILITY GROUP B 2) ... 184 9e-045
>gi|123379|sp|P26585.1|HMGL_SOYBN HMG1/2-like protein (Protein SB11)
Length = 152
Score = 206 bits (523), Expect = 2e-051
Identities = 113/153 (73%), Positives = 125/153 (81%), Gaps = 12/153 (7%)
Frame = -1
Query: 746 MKGGKSNT--KKADSKLAVNKKPAKATRASK-----KAAKDPNKPKRPASAFFVFMEEFR 588
MKGGKS T K+AD KLAVNKK A AT+A K KAAKDPNKPKRP SAFFVFMEEFR
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGA-ATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFR 59
Query: 587 KQFNKENPNNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 408
K FNKE+P NKAVSAVGKAAGAKWK+MS+AEKAPYVAKS+KRKVEYEK M+AYN KQAEG
Sbjct: 60 KVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
Query: 407 NTAAEEEGSEVN----DDEDGDEEGSDEEDDDE 321
T +EE SE + +DED DEEGS EE+DD+
Sbjct: 120 PTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152
>gi|145323960|ref|NP_001077569.1| HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis
thaliana]
Length = 143
Score = 188 bits (475), Expect = 8e-046
Identities = 96/144 (66%), Positives = 112/144 (77%), Gaps = 4/144 (2%)
Frame = -1
Query: 746 MKGGKSNTKKADSKLAVNKKPAKATRASKKAAKDPNKPKRPASAFFVFMEEFRKQFNKEN 567
MKG KS T+ SKL+V KKPAK K AAKDPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 566 PNNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGNTAAEEE 387
P NK+V+ VGKAAG KWKS+S++EKAPYVAK++KRKVEYEK +KAYN K EG EE
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 386 G---SEVNDDEDGDEEGSDEEDDD 324
SEVND++D E+GS+EEDDD
Sbjct: 121 DKSVSEVNDEDDA-EDGSEEEDDD 143
>gi|18394898|ref|NP_564123.1| HMGB2 (HIGH MOBILITY GROUP B 2); transcription
factor [Arabidopsis thaliana]
Length = 144
Score = 187 bits (473), Expect = 1e-045
Identities = 95/145 (65%), Positives = 113/145 (77%), Gaps = 4/145 (2%)
Frame = -1
Query: 746 MKGGKSNTKKADSKLAVNKKPAKATRASKKAAKDPNKPKRPASAFFVFMEEFRKQFNKEN 567
MKG KS T+ SKL+V KKPAK K AAKDPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 566 PNNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGNTAAEEE 387
P NK+V+ VGKAAG KWKS+S++EKAPYVAK++KRKVEYEK +KAYN K EG EE
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 386 G---SEVNDDEDGDEEGSDEEDDDE 321
SEVND++D E+GS+EE+DD+
Sbjct: 121 DKSVSEVNDEDDA-EDGSEEEEDDD 144
>gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 184 bits (466), Expect = 9e-045
Identities = 95/148 (64%), Positives = 114/148 (77%), Gaps = 9/148 (6%)
Frame = -1
Query: 746 MKGGKSN--TKKADSKLAVNKKPAKATRASKKAAKDPNKPKRPASAFFVFMEEFRKQFNK 573
MKGGKS KK D+KL K A A++ S KAAKDPNKPKRPASAFFVFMEEFRKQ+ K
Sbjct: 1 MKGGKSKGAPKKTDTKL--KSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKK 58
Query: 572 ENPNNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGNTAAE 393
E+PNNK+V+AVGKA G KWKSMS+AEKAPY+ K++KRK EY K M+AYN + AEG AE
Sbjct: 59 EHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAE 118
Query: 392 EE-----GSEVNDDEDGDEEGSDEEDDD 324
EE SEVNDD++ D+E ++EDD+
Sbjct: 119 EEESDKSKSEVNDDDEDDDESGEDEDDE 146
>gi|79318286|ref|NP_001031074.1| HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis
thaliana]
Length = 142
Score = 184 bits (466), Expect = 9e-045
Identities = 94/143 (65%), Positives = 111/143 (77%), Gaps = 4/143 (2%)
Frame = -1
Query: 746 MKGGKSNTKKADSKLAVNKKPAKATRASKKAAKDPNKPKRPASAFFVFMEEFRKQFNKEN 567
MKG KS T+ SKL+V KKPAK K AAKDPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 566 PNNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGNTAAEEE 387
P NK+V+ VGKAAG KWKS+S++EKAPYVAK++KRKVEYEK +KAYN K EG EE
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES 120
Query: 386 G---SEVNDDEDGDEEGSDEEDD 327
SEVND++D E+GS+E+DD
Sbjct: 121 DKSVSEVNDEDDA-EDGSEEDDD 142
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,122,045,638
Number of Sequences: 7387702
Number of Extensions: 121122045638
Number of Successful Extensions: 65962939
Number of sequences better than 0.0: 0
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