BLASTX 7.6.2
Query= RU04514 /QuerySize=356
(355 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing prote... 66 7e-010
gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major] 65 9e-010
gi|147815135|emb|CAN74566.1| hypothetical protein [Vitis vinifera] 65 1e-009
gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis] 65 1e-009
gi|15231065|ref|NP_190756.1| HMGB1 (HIGH MOBILITY GROUP B 1); tr... 62 1e-008
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus
pseudonarcissus]
Length = 106
Score = 66 bits (159), Expect = 7e-010
Identities = 30/53 (56%), Positives = 42/53 (79%), Gaps = 6/53 (11%)
Frame = +3
Query: 210 LQLIRVAKERPSRR------RAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
L + R A E+P+++ +A+KDPNKPKRPPSAFFVF+ +FR++FK+KNPN
Sbjct: 18 LSVKRKAAEKPAKKPVVKKSKAEKDPNKPKRPPSAFFVFMEEFRKQFKEKNPN 70
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 65 bits (158), Expect = 9e-010
Identities = 27/35 (77%), Positives = 33/35 (94%)
Frame = +3
Query: 249 RRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
++AKKDPNKPKRPPSAFFVFL +FR+ FKK+NPN+
Sbjct: 90 KKAKKDPNKPKRPPSAFFVFLEEFRQTFKKENPNI 124
>gi|147815135|emb|CAN74566.1| hypothetical protein [Vitis vinifera]
Length = 168
Score = 65 bits (157), Expect = 1e-009
Identities = 28/35 (80%), Positives = 33/35 (94%)
Frame = +3
Query: 249 RRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
++AKKDPNKPKRPPSAFFVFL +FR+ FKK+NPNV
Sbjct: 47 KKAKKDPNKPKRPPSAFFVFLEEFRKVFKKENPNV 81
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
Length = 151
Score = 65 bits (156), Expect = 1e-009
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +3
Query: 222 RVAKERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPN 350
+V ++ ++AKKDPNKPKRPPSAFFVFL +FR+E+K+ NPN
Sbjct: 28 QVKRQIKKEKKAKKDPNKPKRPPSAFFVFLDEFRKEYKQANPN 70
>gi|15231065|ref|NP_190756.1| HMGB1 (HIGH MOBILITY GROUP B 1); transcription
factor [Arabidopsis thaliana]
Length = 178
Score = 62 bits (149), Expect = 1e-008
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 231 KERPSRRRAKKDPNKPKRPPSAFFVFLGQFREEFKKKNPNV 353
+E ++AKKDPNKPKR PSAFFVFL FR FKK+NPNV
Sbjct: 38 RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNV 78
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,768,121,326
Number of Sequences: 7387702
Number of Extensions: 127768121326
Number of Successful Extensions: 73635482
Number of sequences better than 0.0: 0
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