BLASTX 7.6.2
Query= RU04801 /QuerySize=579
(578 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15234669|ref|NP_194751.1| RUXF (SMALL NUCLEAR RIBONUCLEOPROTE... 172 2e-041
gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa (jap... 169 2e-040
gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa (jap... 169 2e-040
gi|194696080|gb|ACF82124.1| unknown [Zea mays] 166 9e-040
gi|195639214|gb|ACG39075.1| unknown [Zea mays] 166 1e-039
>gi|15234669|ref|NP_194751.1| RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
[Arabidopsis thaliana]
Length = 88
Score = 172 bits (435), Expect = 2e-041
Identities = 81/88 (92%), Positives = 84/88 (95%)
Frame = +1
Query: 91 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 270
MATIPVNPKPFLNNLTGKTV VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60
Query: 271 GEILIRCNNVLYLRGVPEDEEIEDAEQD 354
GEILIRCNNVLY+RGVPEDEE+EDA+QD
Sbjct: 61 GEILIRCNNVLYVRGVPEDEELEDADQD 88
>gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa (japonica
cultivar-group)]
Length = 86
Score = 169 bits (426), Expect = 2e-040
Identities = 80/86 (93%), Positives = 83/86 (96%)
Frame = +1
Query: 91 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 270
MAT+PVNPKPFLNNLTGK V VKLKWGMEYKG+LVSVDSYMNLQLANTEEYIDGQF+GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 271 GEILIRCNNVLYLRGVPEDEEIEDAE 348
GEILIRCNNVLYLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVLYLRGVPEDTEIEDAE 86
>gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa (japonica
cultivar-group)]
Length = 86
Score = 169 bits (426), Expect = 2e-040
Identities = 80/86 (93%), Positives = 83/86 (96%)
Frame = +1
Query: 91 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 270
MAT+PVNPKPFLNNLTGK V VKLKWGMEYKG+LVSVDSYMNLQLANTEEYIDGQF+GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 271 GEILIRCNNVLYLRGVPEDEEIEDAE 348
GEILIRCNNVLYLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVLYLRGVPEDAEIEDAE 86
>gi|194696080|gb|ACF82124.1| unknown [Zea mays]
Length = 86
Score = 166 bits (420), Expect = 9e-040
Identities = 78/86 (90%), Positives = 82/86 (95%)
Frame = +1
Query: 91 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 270
MAT+PVNPKPFLNNLTGK V VKLKWGMEYKG+L SVDSYMNLQLANTEEYIDGQF+GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 271 GEILIRCNNVLYLRGVPEDEEIEDAE 348
GEILIRCNNV+YLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVMYLRGVPEDAEIEDAE 86
>gi|195639214|gb|ACG39075.1| unknown [Zea mays]
Length = 86
Score = 166 bits (419), Expect = 1e-039
Identities = 77/86 (89%), Positives = 82/86 (95%)
Frame = +1
Query: 91 MATIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNL 270
MAT+PVNPKPFLNNLTGK + VKLKWGMEYKG+L SVDSYMNLQLANTEEYIDGQF+GNL
Sbjct: 1 MATVPVNPKPFLNNLTGKPIIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNL 60
Query: 271 GEILIRCNNVLYLRGVPEDEEIEDAE 348
GEILIRCNNV+YLRGVPED EIEDAE
Sbjct: 61 GEILIRCNNVMYLRGVPEDAEIEDAE 86
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,862,090,769
Number of Sequences: 7387702
Number of Extensions: 168862090769
Number of Successful Extensions: 83690393
Number of sequences better than 0.0: 0
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