BLASTX 7.6.2
Query= RU05408 /QuerySize=654
(653 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|7387726|sp|O22582|H2B_GOSHI Histone H2B 268 2e-070
gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 268 3e-070
gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 264 4e-069
gi|15226943|ref|NP_180440.1| histone H2B, putative [Arabidopsis ... 251 5e-065
gi|158053020|dbj|BAF81889.1| histone H2B [Nicotiana tabacum] 246 1e-063
>gi|7387726|sp|O22582|H2B_GOSHI Histone H2B
Length = 147
Score = 268 bits (685), Expect = 2e-070
Identities = 140/147 (95%), Positives = 141/147 (95%), Gaps = 1/147 (0%)
Frame = -3
Query: 594 MAPKAEKKPAEKKPA-EKTTVAEKAPAEKKPKAGKKLPKEAGATAGDKKKKRAKKSVETY 418
MAPKAEKKPAEKKPA EK VAEKAPAEKKPKAGKKLPKE GA AGDKKKKR KKSVETY
Sbjct: 1 MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60
Query: 417 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 238
KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTA
Sbjct: 61 KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120
Query: 237 VRLVLPGELAKHAVSEGTKAVTKFTSS 157
VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147
>gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1
Length = 148
Score = 268 bits (684), Expect = 3e-070
Identities = 139/148 (93%), Positives = 143/148 (96%), Gaps = 2/148 (1%)
Frame = -3
Query: 594 MAPKAEKKPAEKKPAE--KTTVAEKAPAEKKPKAGKKLPKEAGATAGDKKKKRAKKSVET 421
MAPK EKKPAEKKPAE K+TVAEKAPAEKKPKAGKKLPKE G+ AG+KKKKR+KKSVET
Sbjct: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60
Query: 420 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 241
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
Query: 240 AVRLVLPGELAKHAVSEGTKAVTKFTSS 157
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
>gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2
Length = 148
Score = 264 bits (674), Expect = 4e-069
Identities = 137/148 (92%), Positives = 141/148 (95%), Gaps = 2/148 (1%)
Frame = -3
Query: 594 MAPKAEKKPAEKKPAE--KTTVAEKAPAEKKPKAGKKLPKEAGATAGDKKKKRAKKSVET 421
MAPK EKKPAEKKPAE K+TVAEKAPAEKKPKAGKKLPKE G+ AG+KKKKR+KKSVET
Sbjct: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60
Query: 420 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 241
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESSRLARYNKKPTITSREIQT
Sbjct: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120
Query: 240 AVRLVLPGELAKHAVSEGTKAVTKFTSS 157
AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148
>gi|15226943|ref|NP_180440.1| histone H2B, putative [Arabidopsis thaliana]
Length = 151
Score = 251 bits (639), Expect = 5e-065
Identities = 133/151 (88%), Positives = 136/151 (90%), Gaps = 5/151 (3%)
Frame = -3
Query: 594 MAPKAEKKPAEKKPAEKT-----TVAEKAPAEKKPKAGKKLPKEAGATAGDKKKKRAKKS 430
MAPKA KKPAEKKPAEK VAEKAPAEKKPKAGKKLPKEA +KKKKR KKS
Sbjct: 1 MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60
Query: 429 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 250
ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61 TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120
Query: 249 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 157
IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151
>gi|158053020|dbj|BAF81889.1| histone H2B [Nicotiana tabacum]
Length = 141
Score = 246 bits (627), Expect = 1e-063
Identities = 129/141 (91%), Positives = 132/141 (93%), Gaps = 5/141 (3%)
Frame = -3
Query: 579 EKKPAEKKPAEKTTVAEKAPAEKKPKAGKKLPKEAGATAGDKKKKRAKKSVETYKIYIFK 400
EKKPAEKKPAE EKAPAEKKPKAGKKLP + GA+ DKKKK+AKKSVETYKIYIFK
Sbjct: 6 EKKPAEKKPAE-----EKAPAEKKPKAGKKLPAKDGASGADKKKKKAKKSVETYKIYIFK 60
Query: 399 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 220
VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120
Query: 219 GELAKHAVSEGTKAVTKFTSS 157
GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,862,090,769
Number of Sequences: 7387702
Number of Extensions: 168862090769
Number of Successful Extensions: 83690393
Number of sequences better than 0.0: 0
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