BLASTX 7.6.2
Query= RU05847 /QuerySize=694
(693 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15221875|ref|NP_175868.1| G-H2AX/GAMMA-H2AX/H2AXB/HTA3; DNA b... 257 7e-067
gi|15223948|ref|NP_172363.1| G-H2AX/GAMMA-H2AX/H2AXA/HTA5; DNA b... 257 7e-067
gi|124360158|gb|ABN08174.1| Histone H2A; Histone-fold [Medicago ... 256 1e-066
gi|147815277|emb|CAN70026.1| hypothetical protein [Vitis vinifera] 256 2e-066
gi|15214035|sp|O65759|H2AX_CICAR Histone H2AX 253 8e-066
>gi|15221875|ref|NP_175868.1| G-H2AX/GAMMA-H2AX/H2AXB/HTA3; DNA binding
[Arabidopsis thaliana]
Length = 142
Score = 257 bits (655), Expect = 7e-067
Identities = 132/140 (94%), Positives = 134/140 (95%)
Frame = +1
Query: 100 SGKEGGSTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAV 279
SG G+TKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAV
Sbjct: 3 SGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 62
Query: 280 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 459
LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 63 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 122
Query: 460 LLPKKVGKGKGDIGSASQEF 519
LLP KVGK KGDIGSASQEF
Sbjct: 123 LLPSKVGKNKGDIGSASQEF 142
>gi|15223948|ref|NP_172363.1| G-H2AX/GAMMA-H2AX/H2AXA/HTA5; DNA binding
[Arabidopsis thaliana]
Length = 142
Score = 257 bits (655), Expect = 7e-067
Identities = 132/140 (94%), Positives = 134/140 (95%)
Frame = +1
Query: 100 SGKEGGSTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAV 279
+G G+TKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAV
Sbjct: 3 TGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAV 62
Query: 280 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 459
LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 63 LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 122
Query: 460 LLPKKVGKGKGDIGSASQEF 519
LLP KVGK KGDIGSASQEF
Sbjct: 123 LLPSKVGKNKGDIGSASQEF 142
>gi|124360158|gb|ABN08174.1| Histone H2A; Histone-fold [Medicago truncatula]
Length = 139
Score = 256 bits (653), Expect = 1e-066
Identities = 130/135 (96%), Positives = 134/135 (99%)
Frame = +1
Query: 115 GSTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLA 294
G+TKGGRGKPKA KSVSRSSKAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5 GTTKGGRGKPKAAKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64
Query: 295 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 474
AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQTLLPKK
Sbjct: 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPKK 124
Query: 475 VGKGKGDIGSASQEF 519
VGKGKG+IGSASQEF
Sbjct: 125 VGKGKGEIGSASQEF 139
>gi|147815277|emb|CAN70026.1| hypothetical protein [Vitis vinifera]
Length = 139
Score = 256 bits (652), Expect = 2e-066
Identities = 130/135 (96%), Positives = 133/135 (98%)
Frame = +1
Query: 115 GSTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLA 294
GSTKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLA
Sbjct: 5 GSTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 64
Query: 295 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 474
AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK
Sbjct: 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 124
Query: 475 VGKGKGDIGSASQEF 519
GKGKG+IGSASQEF
Sbjct: 125 TGKGKGEIGSASQEF 139
>gi|15214035|sp|O65759|H2AX_CICAR Histone H2AX
Length = 139
Score = 253 bits (646), Expect = 8e-066
Identities = 129/134 (96%), Positives = 133/134 (99%)
Frame = +1
Query: 118 STKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 297
+TKGGRGKPKA+KSVSRSSKAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLEYLAA
Sbjct: 6 TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 65
Query: 298 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 477
EVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV
Sbjct: 66 EVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 125
Query: 478 GKGKGDIGSASQEF 519
GKGKG+IGSASQEF
Sbjct: 126 GKGKGEIGSASQEF 139
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,589,088,269
Number of Sequences: 7387702
Number of Extensions: 175589088269
Number of Successful Extensions: 90963865
Number of sequences better than 0.0: 0
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