BLASTX 7.6.2
Query= RU05878 /QuerySize=1821
(1820 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|134142065|gb|ABO61376.1| serine hydroxymethyltransferase [Pop... 899 2e-259
gi|118481215|gb|ABK92558.1| unknown [Populus trichocarpa] 898 3e-259
gi|118484713|gb|ABK94226.1| unknown [Populus trichocarpa] 887 8e-256
gi|134142075|gb|ABO61381.1| serine hydroxymethyltransferase [Pop... 884 4e-255
gi|15236375|ref|NP_193129.1| SHM4 (SERINE HYDROXYMETHYLTRANSFERA... 875 2e-252
>gi|134142065|gb|ABO61376.1| serine hydroxymethyltransferase [Populus
tremuloides]
Length = 471
Score = 899 bits (2321), Expect = 2e-259
Identities = 435/471 (92%), Positives = 453/471 (96%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
M+ V AWGNT+LE+VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
Sbjct: 1 MDPVTAWGNTSLESVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EGMPGNRYYGGNEYIDQIENLCRSRAL+AFHLD ++WGVNVQPYSGSPANFAAYTAVLQP
Sbjct: 61 EGMPGNRYYGGNEYIDQIENLCRSRALEAFHLDPTKWGVNVQPYSGSPANFAAYTAVLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS TGYIDYD+LEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSQTGYIDYDRLEEKALDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+LIICGGSAYPRDWDY RFR+VADKCGALLLCDMAHISGLV AQEAANPFE+CDIVTT
Sbjct: 181 RPKLIICGGSAYPRDWDYKRFRSVADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTT 240
Query: 778 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
TTHKSLRGPRAGMIFYRKGPKPPKKGQPE A YDFEDK+NFAVFPSLQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKVNFAVFPSLQGGPHNHQIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQ TPGFKAYA+QVKANAVALGKYLM + YKLVT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQVQTPGFKAYAKQVKANAVALGKYLMGQGYKLVTEGTENHLVLWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EKLCDLANITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEKDFE+IGEFLHRAVT+TL
Sbjct: 361 EKLCDLANITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRAVTITL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMKYKD 1470
IQKE+GKLLKDFNKGLVNNK+IE LKADVEKFS SFDMPGF MS+MKYKD
Sbjct: 421 SIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFSGSFDMPGFLMSEMKYKD 471
>gi|118481215|gb|ABK92558.1| unknown [Populus trichocarpa]
Length = 471
Score = 898 bits (2320), Expect = 3e-259
Identities = 435/471 (92%), Positives = 453/471 (96%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
M+ V AWGNT+LE+VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
Sbjct: 1 MDPVTAWGNTSLESVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EGMPGNRYYGGNEYIDQIENLCRSRAL+AFHLD ++WGVNVQPYSGSPANFAAYTAVLQP
Sbjct: 61 EGMPGNRYYGGNEYIDQIENLCRSRALEAFHLDPTKWGVNVQPYSGSPANFAAYTAVLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS +GYIDYDKLEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSQSGYIDYDKLEEKALDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+LIICGGSAYPRDWDY +FR+VADKCGALLLCDMAHISGLV AQEAANPFE+CDIVTT
Sbjct: 181 RPKLIICGGSAYPRDWDYKKFRSVADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTT 240
Query: 778 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
TTHKSLRGPRAGMIFYRKGPKPPKKGQPE A YDFEDKINFAVFPSLQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQ TPGFKAYA+QVKANAVALG YLM + YKLVT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQVQTPGFKAYAKQVKANAVALGNYLMGQGYKLVTEGTENHLVLWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EKLCDLANITVNKNAVFGDSSALAPGGVRIG PAMTSRGLVEKDFE+IGEFLHRAVT+TL
Sbjct: 361 EKLCDLANITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRAVTITL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMKYKD 1470
IQKE+GKLLKDFNKGLVNNK+IE LKADVEKFS SFDMPGFQMS+MKYKD
Sbjct: 421 SIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFSGSFDMPGFQMSEMKYKD 471
>gi|118484713|gb|ABK94226.1| unknown [Populus trichocarpa]
Length = 471
Score = 887 bits (2290), Expect = 8e-256
Identities = 429/471 (91%), Positives = 451/471 (95%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
M+ V WGN++L+ VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
Sbjct: 1 MDPVTVWGNSSLQTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EGMPGNRYYGGNEYID+IENLCR+RALQAFHLD ++WGVNVQPYSGSPANFAAYTAVLQP
Sbjct: 61 EGMPGNRYYGGNEYIDEIENLCRARALQAFHLDPTKWGVNVQPYSGSPANFAAYTAVLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN TG++DYD+LEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNPQTGFLDYDRLEEKALDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+LIICGGSAYPRDWDY +FR+VADKCGALLLCDMAHISGLV AQEAANPFE+CDIVTT
Sbjct: 181 RPKLIICGGSAYPRDWDYKKFRSVADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTT 240
Query: 778 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
TTHKSLRGPRAGMIFYRKGPKPPKKGQPE A YDFEDKINFAVFPSLQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQA +PGFKAYA+QVKANAVALG YLMSK YKLVT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQAQSPGFKAYAKQVKANAVALGNYLMSKGYKLVTEGTENHLVLWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFE+IGEFLHRAVT+TL
Sbjct: 361 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTITL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMKYKD 1470
IQKE GKLLKDFNKGLVNNKEIE LKADVE+FS SF+MPGF MS+MKYKD
Sbjct: 421 SIQKEHGKLLKDFNKGLVNNKEIEALKADVEQFSGSFEMPGFLMSEMKYKD 471
>gi|134142075|gb|ABO61381.1| serine hydroxymethyltransferase [Populus
tremuloides]
Length = 471
Score = 884 bits (2284), Expect = 4e-255
Identities = 428/471 (90%), Positives = 450/471 (95%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
M+ V WGN++L+ VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
Sbjct: 1 MDPVTVWGNSSLQTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EGMPGNRYYGGNEYID+IENLCR+RALQAFHLD ++WGVNVQPYSGSPANFAAYTAVLQP
Sbjct: 61 EGMPGNRYYGGNEYIDEIENLCRARALQAFHLDPTKWGVNVQPYSGSPANFAAYTAVLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN TG++DYD+ EEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNPQTGFLDYDRWEEKALDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+LIICGGSAYPRDWDY +FR+VADKCGALLLCDMAHISGLV AQEAANPFE+CDIVTT
Sbjct: 181 RPKLIICGGSAYPRDWDYKKFRSVADKCGALLLCDMAHISGLVAAQEAANPFEYCDIVTT 240
Query: 778 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
TTHKSLRGPRAGMIFYRKGPKPPKKGQPE A YDFEDKINFAVFPSLQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQA +PGFKAYA+QVKANAVALG YLMSK YKLVT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQAQSPGFKAYAKQVKANAVALGNYLMSKGYKLVTEGTENHLVLWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFE+IGEFLHRAVT+TL
Sbjct: 361 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTITL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMKYKD 1470
IQKE GKLLKDFNKGLVNNKEIE LKADVE+FS SF+MPGF MS+MKYKD
Sbjct: 421 SIQKEHGKLLKDFNKGLVNNKEIEALKADVEQFSGSFEMPGFLMSEMKYKD 471
>gi|15236375|ref|NP_193129.1| SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine
hydroxymethyltransferase [Arabidopsis thaliana]
Length = 471
Score = 875 bits (2260), Expect = 2e-252
Identities = 421/471 (89%), Positives = 452/471 (95%)
Frame = +1
Query: 58 MEAVNAWGNTNLEAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 237
ME V++WGNT+L +VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
Sbjct: 1 MEPVSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
Query: 238 EGMPGNRYYGGNEYIDQIENLCRSRALQAFHLDASQWGVNVQPYSGSPANFAAYTAVLQP 417
EG+PGNRYYGGNE+ID+IENLCRSRAL+AFH D + WGVNVQPYSGSPANFAAYTA+LQP
Sbjct: 61 EGIPGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQP 120
Query: 418 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 597
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN +TGYIDYDKLEEKALDF
Sbjct: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDF 180
Query: 598 RPRLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVCAQEAANPFEFCDIVTT 777
RP+L+ICGGSAYPRDWDYARFRA+ADK GALLLCDMAHISGLV AQEAANPFE+CD+VTT
Sbjct: 181 RPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTT 240
Query: 778 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAEYDFEDKINFAVFPSLQGGPHNHQIGALA 957
TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGA YDFEDKINFAVFP+LQGGPHNHQIGALA
Sbjct: 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALA 300
Query: 958 VALKQAMTPGFKAYAQQVKANAVALGKYLMSKDYKLVTGGTENHLVLWDLRPLGLTGNKV 1137
VALKQA TPGFK YA+QVKANAVALG YLMSK Y++VT GTENHLVLWDLRPLGLTGNKV
Sbjct: 301 VALKQANTPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKV 360
Query: 1138 EKLCDLANITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEKIGEFLHRAVTLTL 1317
EKLCDL +IT+NKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFE+IGEFL RAVTLTL
Sbjct: 361 EKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTL 420
Query: 1318 KIQKEFGKLLKDFNKGLVNNKEIEELKADVEKFSASFDMPGFQMSQMKYKD 1470
IQK +GKLLKDFNKGLVNNK++++LKADVEKFSAS++MPGF MS+MKYKD
Sbjct: 421 DIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,589,088,269
Number of Sequences: 7387702
Number of Extensions: 175589088269
Number of Successful Extensions: 90963865
Number of sequences better than 0.0: 0
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