BLASTX 7.6.2
Query= RU06952 /QuerySize=950
(949 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|162459285|ref|NP_001105402.1| nucleolar histone deacetylase H... 96 3e-018
gi|149270040|ref|XP_001477240.1| PREDICTED: hypothetical protein... 72 5e-011
gi|34809533|gb|AAQ82687.1| Epa5p [Candida glabrata] 70 2e-010
gi|126321338|ref|XP_001379356.1| PREDICTED: hypothetical protein... 70 2e-010
gi|109133409|ref|XP_001117357.1| PREDICTED: hypothetical protein... 70 3e-010
>gi|162459285|ref|NP_001105402.1| nucleolar histone deacetylase HD2-p39 [Zea
mays]
Length = 307
Score = 96 bits (238), Expect = 3e-018
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Frame = +3
Query: 3 ELSHNWKSGSVHFAGYQSVMGDEESDDEFESESEEEEEELPMIAAENGKVENAKPAIAKS 182
ELSH K+ SV F GY+ EE + + +SE E+EE +P++ ENGK + K +
Sbjct: 75 ELSHTSKTTSVFFTGYKVEQPFEEDEMDLDSEDEDEELNVPVV-KENGKADEKKQKSQEK 133
Query: 183 NAVKPESSGKQKVKIEEPIKVEADEDDSASDMDDSDDLLDEDDSSEDDDDESEDD---SD 353
P S K ++ + DE D SD D++DD DE SSE+ DD+S D+ SD
Sbjct: 134 AVAAPSKSSPDSKKSKDDDDSDEDETDD-SDEDETDD-SDEGLSSEEGDDDSSDEDDTSD 191
Query: 354 EEDEETPTPKKPEY*KKSP 410
+E+E+TPTPKKPE KK P
Sbjct: 192 DEEEDTPTPKKPEVGKKRP 210
>gi|149270040|ref|XP_001477240.1| PREDICTED: hypothetical protein [Mus
musculus]
Length = 372
Score = 72 bits (176), Expect = 5e-011
Identities = 49/101 (48%), Positives = 63/101 (62%)
Frame = -1
Query: 367 SSSSSSESSSLSSSSSSDESSSSNKSSESSMSEAESSSSASTLIGSSILTFCFPEDSGLT 188
SSSSSS SSS SSSSSS SSSS+ SS SS S + SSSS+S+ SS + C S +
Sbjct: 123 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSCSSSSSSSS 182
Query: 187 ALLLAIAGFAFSTFPFSAAIIGSSSSSSSDSDSNSSSDSSS 65
+ + + + S+ S++ SSSSSSS S S+S S SSS
Sbjct: 183 SSSCSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSCSSSSS 223
>gi|34809533|gb|AAQ82687.1| Epa5p [Candida glabrata]
Length = 1218
Score = 70 bits (171), Expect = 2e-010
Identities = 50/101 (49%), Positives = 63/101 (62%)
Frame = -1
Query: 367 SSSSSSESSSLSSSSSSDESSSSNKSSESSMSEAESSSSASTLIGSSILTFCFPEDSGLT 188
SSSSSS SSS SSSSSS SSSS+ SS SS S + SSSS+S+ SS + P S +
Sbjct: 345 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSPSPSSSSSS 404
Query: 187 ALLLAIAGFAFSTFPFSAAIIGSSSSSSSDSDSNSSSDSSS 65
+ + + + S+ S++ SSSSSSS S S SSS SSS
Sbjct: 405 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSS 445
>gi|126321338|ref|XP_001379356.1| PREDICTED: hypothetical protein [Monodelphis
domestica]
Length = 359
Score = 70 bits (171), Expect = 2e-010
Identities = 49/101 (48%), Positives = 64/101 (63%)
Frame = -1
Query: 367 SSSSSSESSSLSSSSSSDESSSSNKSSESSMSEAESSSSASTLIGSSILTFCFPEDSGLT 188
SSSSSS SSS SSSSSS SSSS+ SS SS S + SSSS+S+ SS + SG +
Sbjct: 42 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSS 101
Query: 187 ALLLAIAGFAFSTFPFSAAIIGSSSSSSSDSDSNSSSDSSS 65
+ + + + S+ S++ SSSSSSS S S+SSS S+S
Sbjct: 102 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSRSNS 142
>gi|109133409|ref|XP_001117357.1| PREDICTED: hypothetical protein, partial
[Macaca mulatta]
Length = 213
Score = 70 bits (169), Expect = 3e-010
Identities = 49/101 (48%), Positives = 63/101 (62%)
Frame = -1
Query: 367 SSSSSSESSSLSSSSSSDESSSSNKSSESSMSEAESSSSASTLIGSSILTFCFPEDSGLT 188
SSSS S SSS SSSSSS SSSS+ SS SS S + SSSS+S+ SS + SG +
Sbjct: 85 SSSSGSSSSSSSSSSSSSSSSSSSGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSS 144
Query: 187 ALLLAIAGFAFSTFPFSAAIIGSSSSSSSDSDSNSSSDSSS 65
+ + + + S+ S++ SSSSSSS S S+SSS SSS
Sbjct: 145 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSSSSSS 185
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,143,483,431
Number of Sequences: 7387702
Number of Extensions: 250143483431
Number of Successful Extensions: 138270154
Number of sequences better than 0.0: 0
|