BLASTX 7.6.2
Query= RU10055 /QuerySize=503
(502 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|18422645|ref|NP_568658.1| CUL4 (CULLIN4); protein binding / u... 111 3e-023
gi|147775823|emb|CAN75926.1| hypothetical protein [Vitis vinifera] 102 2e-020
gi|157350343|emb|CAO40323.1| unnamed protein product [Vitis vini... 102 2e-020
gi|159895408|gb|ABX09988.1| cullin 4 [Solanum lycopersicum] 95 2e-018
gi|168047754|ref|XP_001776334.1| predicted protein [Physcomitrel... 94 3e-018
>gi|18422645|ref|NP_568658.1| CUL4 (CULLIN4); protein binding /
ubiquitin-protein ligase [Arabidopsis thaliana]
Length = 792
Score = 111 bits (276), Expect = 3e-023
Identities = 71/132 (53%), Positives = 83/132 (62%), Gaps = 5/132 (3%)
Frame = +3
Query: 111 SHPNKRSSSTTTTSSSSSSLTSPPPMKKAKS--HSQPDTKNGLHHHTHSDNDDDGRRAQP 284
S P KRS+ + ++S SS +S PPMKKAK+ H P N ++D A
Sbjct: 2 SLPTKRSTFSAASASDDSSYSS-PPMKKAKNDLHHSPQHPNTADKVVGFHMEEDPTPAAA 60
Query: 285 DNLSRKKAQPPQPGKKQFVIKPFKAKPAVPKNLEEETWEILKSAICAIFLKKPVSCVLED 464
NLSRKKA PQP KK FVIK KAKP +P N EE TWE L+SAI AIFLKK +S LE
Sbjct: 61 -NLSRKKATLPQPTKK-FVIKLNKAKPTLPTNFEENTWEKLQSAIRAIFLKKKISFDLES 118
Query: 465 LYQAVYNLCVHK 500
LYQAV NLC+HK
Sbjct: 119 LYQAVDNLCLHK 130
>gi|147775823|emb|CAN75926.1| hypothetical protein [Vitis vinifera]
Length = 806
Score = 102 bits (252), Expect = 2e-020
Identities = 50/71 (70%), Positives = 55/71 (77%)
Frame = +3
Query: 288 NLSRKKAQPPQPGKKQFVIKPFKAKPAVPKNLEEETWEILKSAICAIFLKKPVSCVLEDL 467
NLSRKKA PPQP KKQ VIK KAKP +P N EE+TW LKSAI AIFLK+P C LE L
Sbjct: 70 NLSRKKATPPQPAKKQLVIKLLKAKPTLPTNFEEDTWAKLKSAISAIFLKQPDPCDLEKL 129
Query: 468 YQAVYNLCVHK 500
YQAV +LC+HK
Sbjct: 130 YQAVNDLCLHK 140
>gi|157350343|emb|CAO40323.1| unnamed protein product [Vitis vinifera]
Length = 802
Score = 102 bits (252), Expect = 2e-020
Identities = 50/71 (70%), Positives = 55/71 (77%)
Frame = +3
Query: 288 NLSRKKAQPPQPGKKQFVIKPFKAKPAVPKNLEEETWEILKSAICAIFLKKPVSCVLEDL 467
NLSRKKA PPQP KKQ VIK KAKP +P N EE+TW LKSAI AIFLK+P C LE L
Sbjct: 70 NLSRKKATPPQPAKKQLVIKLLKAKPTLPTNFEEDTWAKLKSAISAIFLKQPDPCDLEKL 129
Query: 468 YQAVYNLCVHK 500
YQAV +LC+HK
Sbjct: 130 YQAVNDLCLHK 140
>gi|159895408|gb|ABX09988.1| cullin 4 [Solanum lycopersicum]
Length = 785
Score = 95 bits (235), Expect = 2e-018
Identities = 49/71 (69%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +3
Query: 288 NLSRKKAQPPQPGKKQFVIKPFKAKPAVPKNLEEETWEILKSAICAIFLKKPVSCVLEDL 467
NLSRKKA PPQP KK VIK KAKP +P N EE TW LKSAI AIFLK+P C LE L
Sbjct: 54 NLSRKKATPPQPAKK-LVIKLLKAKPTLPTNFEENTWATLKSAISAIFLKQPDPCDLEKL 112
Query: 468 YQAVYNLCVHK 500
YQAV +LC+HK
Sbjct: 113 YQAVNDLCLHK 123
>gi|168047754|ref|XP_001776334.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 768
Score = 94 bits (233), Expect = 3e-018
Identities = 51/86 (59%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Frame = +3
Query: 243 THSDNDDDGRRAQPDNLSRKKAQPPQPGKKQFVIKPFKAKPAVPKNLEEETWEILKSAIC 422
T S+N G A NLSRKKA PP P KK VIKPFK KP +P N EE TW +K A+
Sbjct: 25 TLSNNPGVGTTA---NLSRKKATPPPPAKK-LVIKPFKDKPKLPANFEEVTWVKIKEAVT 80
Query: 423 AIFLKKPVSCVLEDLYQAVYNLCVHK 500
AI LK+PV+C LE+LY+AV +LCVHK
Sbjct: 81 AIHLKQPVNCSLEELYRAVEDLCVHK 106
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,939,573,105
Number of Sequences: 7387702
Number of Extensions: 301939573105
Number of Successful Extensions: 164633019
Number of sequences better than 0.0: 0
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