BLASTX 7.6.2
Query= RU10890 /QuerySize=254
(253 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|57098919|ref|XP_540285.1| PREDICTED: similar to H3 histone, f... 119 8e-026
gi|116060503|emb|CAL55839.1| Histones H3 and H4 (ISS) [Ostreococ... 118 2e-025
gi|170049060|ref|XP_001870860.1| histone H3.2 [Culex quinquefasc... 117 3e-025
gi|1076583|pir||S51664 histone H3.3 - tomato (fragment) 116 5e-025
gi|15236103|ref|NP_195713.1| histone H3.2 [Arabidopsis thaliana] 116 5e-025
>gi|57098919|ref|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isoform
2 [Canis familiaris]
Length = 174
Score = 119 bits (297), Expect = 8e-026
Identities = 59/66 (89%), Positives = 61/66 (92%)
Frame = +3
Query: 54 RRFRRRRRAMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALRE 233
RR+ R AMARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALRE
Sbjct: 30 RRYSPSRFAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALRE 89
Query: 234 IRKYQK 251
IR+YQK
Sbjct: 90 IRRYQK 95
>gi|116060503|emb|CAL55839.1| Histones H3 and H4 (ISS) [Ostreococcus tauri]
Length = 167
Score = 118 bits (294), Expect = 2e-025
Identities = 60/72 (83%), Positives = 62/72 (86%)
Frame = +3
Query: 36 SLDLASRRFRRRRRAMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPG 215
+LD +RR MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPG
Sbjct: 17 TLDSIARRRHNSTVNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG 76
Query: 216 TVALREIRKYQK 251
TVALREIRKYQK
Sbjct: 77 TVALREIRKYQK 88
>gi|170049060|ref|XP_001870860.1| histone H3.2 [Culex quinquefasciatus]
Length = 145
Score = 117 bits (292), Expect = 3e-025
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = +3
Query: 66 RRRRAMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY 245
RR MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+Y
Sbjct: 5 RRETTMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRY 64
Query: 246 QK 251
QK
Sbjct: 65 QK 66
>gi|1076583|pir||S51664 histone H3.3 - tomato (fragment)
Length = 60
Score = 116 bits (290), Expect = 5e-025
Identities = 57/57 (100%)
Frame = +3
Query: 81 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK 251
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK 57
>gi|15236103|ref|NP_195713.1| histone H3.2 [Arabidopsis thaliana]
Length = 136
Score = 116 bits (290), Expect = 5e-025
Identities = 57/57 (100%)
Frame = +3
Query: 81 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK 251
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQK 57
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,939,573,105
Number of Sequences: 7387702
Number of Extensions: 301939573105
Number of Successful Extensions: 164633019
Number of sequences better than 0.0: 0
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