BLASTX 7.6.2
Query= RU11012 /QuerySize=250
(249 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|186522847|ref|NP_196950.2| pseudouridylate synthase TruB fami... 131 3e-029
gi|7573471|emb|CAB87785.1| tRNA synthase-like protein [Arabidops... 130 3e-029
gi|157345383|emb|CAO14681.1| unnamed protein product [Vitis vini... 119 1e-025
gi|28195117|gb|AAO33771.1| putative tRNA pseudouridine synthase ... 85 2e-015
gi|14719313|gb|AAK73131.1|AC079022_4 putative tRNA synthase [Ory... 85 2e-015
>gi|186522847|ref|NP_196950.2| pseudouridylate synthase TruB family protein
[Arabidopsis thaliana]
Length = 540
Score = 131 bits (327), Expect = 3e-029
Identities = 60/78 (76%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 DP-MEKKKRKYYNKRRKRMYGGDSEEEEEKRREGEKLVELKPEVVEFNTLHKREEELYFY 195
DP M+K KRKYY+KRRKR+YG DSE+E R+ E VELKPEVVEF+ LH+REEELYFY
Sbjct: 111 DPEMDKAKRKYYSKRRKRLYGSDSEDENSSRKSDEGFVELKPEVVEFDRLHQREEELYFY 170
Query: 196 DTFAYPWEKDKHYKMVYQ 249
DTFAYPWEKDKHYKMVYQ
Sbjct: 171 DTFAYPWEKDKHYKMVYQ 188
>gi|7573471|emb|CAB87785.1| tRNA synthase-like protein [Arabidopsis thaliana]
Length = 540
Score = 130 bits (326), Expect = 3e-029
Identities = 60/78 (76%), Positives = 67/78 (85%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 DP-MEKKKRKYYNKRRKRMYGGDSEEEEEKRREGEKLVELKPEVVEFNTLHKREEELYFY 195
DP M+K KRKYY+KRRKR+YG DSE+E R+ E VELKPEVVEF+ LH+REEELYFY
Sbjct: 111 DPEMDKAKRKYYSKRRKRLYGSDSEDETSSRKSDEGFVELKPEVVEFDRLHQREEELYFY 170
Query: 196 DTFAYPWEKDKHYKMVYQ 249
DTFAYPWEKDKHYKMVYQ
Sbjct: 171 DTFAYPWEKDKHYKMVYQ 188
>gi|157345383|emb|CAO14681.1| unnamed protein product [Vitis vinifera]
Length = 502
Score = 119 bits (296), Expect = 1e-025
Identities = 56/75 (74%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Frame = +1
Query: 25 MEKKKRKYYNKRRKRMYGGDSEEEEEKRREGEKLVELKPEVVEFNTLHKREEELYFYDTF 204
M+K KRKYYNKRRKRMYG DS+E+ + EK VELK EVVE TLHK+EEELYFYD F
Sbjct: 111 MDKAKRKYYNKRRKRMYGSDSDEDGGAAQ--EKYVELKQEVVELRTLHKKEEELYFYDAF 168
Query: 205 AYPWEKDKHYKMVYQ 249
AYPWEK+KHYKMVYQ
Sbjct: 169 AYPWEKEKHYKMVYQ 183
>gi|28195117|gb|AAO33771.1| putative tRNA pseudouridine synthase [Oryza sativa
(indica cultivar-group)]
Length = 458
Score = 85 bits (208), Expect = 2e-015
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 DPMEKKKRKYYNKRRKRMY-GGDSEEEEEKRREGEKLVELKPEVVEFNTLHKREEELYFY 195
D +++ KR+Y KRR R+ D+ + + VELKPEVV+F LH REE LYF+
Sbjct: 72 DHLDRAKRRYLRKRRSRLLPDPDATTAKPSSSSSSEFVELKPEVVDFPRLHAREEALYFH 131
Query: 196 DTFAYPWEKDKHYKMVYQ 249
D FA PWEKDKHY+M+Y+
Sbjct: 132 DAFALPWEKDKHYRMLYR 149
>gi|14719313|gb|AAK73131.1|AC079022_4 putative tRNA synthase [Oryza sativa]
Length = 525
Score = 85 bits (208), Expect = 2e-015
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 DPMEKKKRKYYNKRRKRMY-GGDSEEEEEKRREGEKLVELKPEVVEFNTLHKREEELYFY 195
D +++ KR+Y KRR R+ D+ + + VELKPEVV+F LH REE LYF+
Sbjct: 109 DHLDRAKRRYLRKRRSRLLPDPDATTAKPSSSSSSEFVELKPEVVDFPRLHAREEALYFH 168
Query: 196 DTFAYPWEKDKHYKMVYQ 249
D FA PWEKDKHY+M+Y+
Sbjct: 169 DAFALPWEKDKHYRMLYR 186
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,939,573,105
Number of Sequences: 7387702
Number of Extensions: 301939573105
Number of Successful Extensions: 164633019
Number of sequences better than 0.0: 0
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