BLASTX 7.6.2
Query= RU13460 /QuerySize=698
(697 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|19698365|gb|AAL93108.1|AF414937_1 holocarboxylase synthetase ... 270 1e-070
gi|18400914|ref|NP_565605.1| HCS1 (HOLOCARBOXYLASE SYNTHASE); ca... 268 2e-070
gi|157335977|emb|CAO61807.1| unnamed protein product [Vitis vini... 265 4e-069
gi|30693409|ref|NP_850957.1| HCS2 (HOLOCARBOXYLASE SYNTHETASE 2)... 253 1e-065
gi|6623977|gb|AAF19230.1|AC007505_6 Putative biotin holocarboxyl... 253 1e-065
>gi|19698365|gb|AAL93108.1|AF414937_1 holocarboxylase synthetase 1 [Arabidopsis
thaliana]
Length = 367
Score = 270 bits (688), Expect = 1e-070
Identities = 131/198 (66%), Positives = 162/198 (81%), Gaps = 3/198 (1%)
Frame = +1
Query: 106 RRTSSAISAASGMDCNSSLY.WCCAGKSQAESNIAEGLKNSNALKLSDNGELSILLDSEL 285
RR S + S AS M+ ++S C GKS E+ +A+GLKN N+LKL DN ++S++L+SE
Sbjct: 28 RRLSFSFS-ASAMESDASCSLVLC-GKSSVETEVAKGLKNKNSLKLPDNTKVSLILESEA 85
Query: 286 KKPFKEDD-AFGIDSFMNSLSTDRFGRLLLWSPRLPSTQDVVSQNFCELPNGAVCVADVQ 462
K K+DD +F + FMNS+ T RFGR L+WSPRL ST DVVS NF ELP G+VCV D+Q
Sbjct: 86 KNLVKDDDNSFNLSLFMNSIITHRFGRFLIWSPRLSSTHDVVSHNFSELPVGSVCVTDIQ 145
Query: 463 YKGRGRSKNVWESPKGCLLFSFTLQMEDGRIVPLIQYVVSLAITEAIKDVCDRNGLPYID 642
+KGRGR+KNVWESPKGCL++SFTL+MEDGR+VPLIQYVVSLA+TEA+KDVCD+ GLPYID
Sbjct: 146 FKGRGRTKNVWESPKGCLMYSFTLEMEDGRVVPLIQYVVSLAVTEAVKDVCDKKGLPYID 205
Query: 643 VRIKWPNDLYLNGLKVGG 696
V+IKWPNDLY+NGLKVGG
Sbjct: 206 VKIKWPNDLYVNGLKVGG 223
>gi|18400914|ref|NP_565605.1| HCS1 (HOLOCARBOXYLASE SYNTHASE); catalytic
[Arabidopsis thaliana]
Length = 367
Score = 268 bits (685), Expect = 2e-070
Identities = 127/190 (66%), Positives = 158/190 (83%), Gaps = 2/190 (1%)
Frame = +1
Query: 130 AASGMDCNSSLY.WCCAGKSQAESNIAEGLKNSNALKLSDNGELSILLDSELKKPFKEDD 309
+AS M+ ++S C GKS E+ +A+GLKN N+LKL DN ++S++L+SE K K+DD
Sbjct: 35 SASAMESDASCSLVLC-GKSSVETEVAKGLKNKNSLKLPDNTKVSLILESEAKNLVKDDD 93
Query: 310 -AFGIDSFMNSLSTDRFGRLLLWSPRLPSTQDVVSQNFCELPNGAVCVADVQYKGRGRSK 486
+F + FMNS+ T RFGR L+WSPRL ST DVVS NF ELP G+VCV D+Q+KGRGR+K
Sbjct: 94 NSFNLSLFMNSIITHRFGRFLIWSPRLSSTHDVVSHNFSELPVGSVCVTDIQFKGRGRTK 153
Query: 487 NVWESPKGCLLFSFTLQMEDGRIVPLIQYVVSLAITEAIKDVCDRNGLPYIDVRIKWPND 666
NVWESPKGCL++SFTL+MEDGR+VPLIQYVVSLA+TEA+KDVCD+ GLPYIDV+IKWPND
Sbjct: 154 NVWESPKGCLMYSFTLEMEDGRVVPLIQYVVSLAVTEAVKDVCDKKGLPYIDVKIKWPND 213
Query: 667 LYLNGLKVGG 696
LY+NGLKVGG
Sbjct: 214 LYVNGLKVGG 223
>gi|157335977|emb|CAO61807.1| unnamed protein product [Vitis vinifera]
Length = 327
Score = 265 bits (675), Expect = 4e-069
Identities = 131/182 (71%), Positives = 150/182 (82%), Gaps = 4/182 (2%)
Frame = +1
Query: 151 NSSLY.WCCAGKSQAESNIAEGLKNSNALKLSDNGELSILLDSELKKPFKEDDAFGIDSF 330
++SL C GKS AE A+ LK N LKL DNGE+SILL E++KP E++ F +D F
Sbjct: 5 STSLLVLC--GKSSAEIEFAKSLKAKNTLKLPDNGEVSILLHPEIEKP--EEEPFQMDLF 60
Query: 331 MNSLSTDRFGRLLLWSPRLPSTQDVVSQNFCELPNGAVCVADVQYKGRGRSKNVWESPKG 510
M+SLST+ FGR L+WSP+LPST DVVSQNFCELP G VCVADVQ KGRGRSKN WESP+G
Sbjct: 61 MSSLSTNTFGRFLIWSPQLPSTHDVVSQNFCELPIGTVCVADVQLKGRGRSKNKWESPRG 120
Query: 511 CLLFSFTLQMEDGRIVPLIQYVVSLAITEAIKDVCDRNGLPYIDVRIKWPNDLYLNGLKV 690
CLLFSFTLQMEDGR VPL+QYVVSLAITEAIK +CD GLP++DV+IKWPNDLYLNGLKV
Sbjct: 121 CLLFSFTLQMEDGRTVPLLQYVVSLAITEAIKSICDSKGLPHLDVKIKWPNDLYLNGLKV 180
Query: 691 GG 696
GG
Sbjct: 181 GG 182
>gi|30693409|ref|NP_850957.1| HCS2 (HOLOCARBOXYLASE SYNTHETASE 2); catalytic
[Arabidopsis thaliana]
Length = 329
Score = 253 bits (644), Expect = 1e-065
Identities = 121/186 (65%), Positives = 150/186 (80%), Gaps = 4/186 (2%)
Frame = +1
Query: 142 MDCNSSLY.WCCAGKSQAESNIAEGLKNSNALKLSDNGELSILLDSELKKPFKEDD-AFG 318
+D + SL + GKS E++ A LKN+N LKL DN ++SI L SE+K ++DD +F
Sbjct: 3 IDASCSLVLY---GKSSVETDTATRLKNNNVLKLPDNSKVSIFLQSEIKNLVRDDDSSFN 59
Query: 319 IDSFMNSLSTDRFGRLLLWSPRLPSTQDVVSQNFCELPNGAVCVADVQYKGRGRSKNVWE 498
+ FMNS+ST RFGR L+WSP L ST DVVS NF E+P G+VCV+D+Q KGRGR+KNVWE
Sbjct: 60 LSLFMNSISTHRFGRFLIWSPYLSSTHDVVSHNFSEIPVGSVCVSDIQLKGRGRTKNVWE 119
Query: 499 SPKGCLLFSFTLQMEDGRIVPLIQYVVSLAITEAIKDVCDRNGLPYIDVRIKWPNDLYLN 678
SPKGCL++SFTL+MEDGR+VPLIQYVVSLA+TEA+KDVCD+ GL Y DV+IKWPNDLYLN
Sbjct: 120 SPKGCLMYSFTLEMEDGRVVPLIQYVVSLAVTEAVKDVCDKKGLSYNDVKIKWPNDLYLN 179
Query: 679 GLKVGG 696
GLK+GG
Sbjct: 180 GLKIGG 185
>gi|6623977|gb|AAF19230.1|AC007505_6 Putative biotin holocarboxylase synthetase
[Arabidopsis thaliana]
Length = 310
Score = 253 bits (644), Expect = 1e-065
Identities = 121/186 (65%), Positives = 150/186 (80%), Gaps = 4/186 (2%)
Frame = +1
Query: 142 MDCNSSLY.WCCAGKSQAESNIAEGLKNSNALKLSDNGELSILLDSELKKPFKEDD-AFG 318
+D + SL + GKS E++ A LKN+N LKL DN ++SI L SE+K ++DD +F
Sbjct: 3 IDASCSLVLY---GKSSVETDTATRLKNNNVLKLPDNSKVSIFLQSEIKNLVRDDDSSFN 59
Query: 319 IDSFMNSLSTDRFGRLLLWSPRLPSTQDVVSQNFCELPNGAVCVADVQYKGRGRSKNVWE 498
+ FMNS+ST RFGR L+WSP L ST DVVS NF E+P G+VCV+D+Q KGRGR+KNVWE
Sbjct: 60 LSLFMNSISTHRFGRFLIWSPYLSSTHDVVSHNFSEIPVGSVCVSDIQLKGRGRTKNVWE 119
Query: 499 SPKGCLLFSFTLQMEDGRIVPLIQYVVSLAITEAIKDVCDRNGLPYIDVRIKWPNDLYLN 678
SPKGCL++SFTL+MEDGR+VPLIQYVVSLA+TEA+KDVCD+ GL Y DV+IKWPNDLYLN
Sbjct: 120 SPKGCLMYSFTLEMEDGRVVPLIQYVVSLAVTEAVKDVCDKKGLSYNDVKIKWPNDLYLN 179
Query: 679 GLKVGG 696
GLK+GG
Sbjct: 180 GLKIGG 185
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,404,849,014
Number of Sequences: 7387702
Number of Extensions: 340404849014
Number of Successful Extensions: 174486074
Number of sequences better than 0.0: 0
|