BLASTX 7.6.2
Query= RU14258 /QuerySize=764
(763 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|267072|sp|P29500.1|TBB1_PEA RecName: Full=Tubulin beta-1 chai... 236 2e-060
gi|205326619|gb|ACI03399.1| beta-tubulin [Prunus salicina var. c... 235 4e-060
gi|3986687|gb|AAC84132.1| beta-tubulin [Cichorium intybus] 234 6e-060
gi|51945069|gb|AAU14217.1| TUB8 [Quercus petraea] 233 1e-059
gi|194702760|gb|ACF85464.1| unknown [Zea mays] 233 2e-059
>gi|267072|sp|P29500.1|TBB1_PEA RecName: Full=Tubulin beta-1 chain; AltName:
Full=Beta-1-tubulin
Length = 450
Score = 236 bits (600), Expect = 2e-060
Identities = 109/123 (88%), Positives = 118/123 (95%)
Frame = -3
Query: 662 LLHIQGRKCGNQIGAKFWEVVCAEHGIDPTGRYTGDSELQLERVNVYYNEASGGRYVPRA 483
+LHIQG +CGNQIGAKFWEVVCAEHGIDPTGRYTGDS+LQLER++VYYNEASGGR+VPRA
Sbjct: 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERIDVYYNEASGGRFVPRA 63
Query: 482 VLMDLESGTMDSVRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKD 303
VLMDLE GTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK+
Sbjct: 64 VLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKE 123
Query: 302 GRS 294
+
Sbjct: 124 AEN 126
>gi|205326619|gb|ACI03399.1| beta-tubulin [Prunus salicina var. cordata]
Length = 446
Score = 235 bits (598), Expect = 4e-060
Identities = 111/123 (90%), Positives = 116/123 (94%)
Frame = -3
Query: 662 LLHIQGRKCGNQIGAKFWEVVCAEHGIDPTGRYTGDSELQLERVNVYYNEASGGRYVPRA 483
+LHIQG +CGNQIGAKFWEVVCAEHGID TGRY GDSELQLERVNVYYNEASGGRYVPRA
Sbjct: 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYHGDSELQLERVNVYYNEASGGRYVPRA 63
Query: 482 VLMDLESGTMDSVRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKD 303
VLMDLE GTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK+
Sbjct: 64 VLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKE 123
Query: 302 GRS 294
+
Sbjct: 124 AEN 126
>gi|3986687|gb|AAC84132.1| beta-tubulin [Cichorium intybus]
Length = 173
Score = 234 bits (596), Expect = 6e-060
Identities = 109/123 (88%), Positives = 117/123 (95%)
Frame = -3
Query: 662 LLHIQGRKCGNQIGAKFWEVVCAEHGIDPTGRYTGDSELQLERVNVYYNEASGGRYVPRA 483
+LHIQG +CGNQIGAKFWEVVCAEHGID TG+YTGDSELQLER+NVYYNEASGGR+VPRA
Sbjct: 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDVTGKYTGDSELQLERINVYYNEASGGRFVPRA 63
Query: 482 VLMDLESGTMDSVRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKD 303
VLMDLE GTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK+
Sbjct: 64 VLMDLEPGTMDSLRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKE 123
Query: 302 GRS 294
+
Sbjct: 124 AEN 126
>gi|51945069|gb|AAU14217.1| TUB8 [Quercus petraea]
Length = 446
Score = 233 bits (593), Expect = 1e-059
Identities = 108/123 (87%), Positives = 116/123 (94%)
Frame = -3
Query: 662 LLHIQGRKCGNQIGAKFWEVVCAEHGIDPTGRYTGDSELQLERVNVYYNEASGGRYVPRA 483
+LHIQG +CGNQIGAKFWEVVCAEHGIDPTG+Y GDS+LQLER+NVYYNEAS GRYVPRA
Sbjct: 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGKYQGDSDLQLERINVYYNEASCGRYVPRA 63
Query: 482 VLMDLESGTMDSVRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKD 303
VLMDLE GTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK+
Sbjct: 64 VLMDLEPGTMDSIRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKE 123
Query: 302 GRS 294
+
Sbjct: 124 AEN 126
>gi|194702760|gb|ACF85464.1| unknown [Zea mays]
Length = 496
Score = 233 bits (592), Expect = 2e-059
Identities = 111/129 (86%), Positives = 119/129 (92%)
Frame = -3
Query: 680 STKML*LLHIQGRKCGNQIGAKFWEVVCAEHGIDPTGRYTGDSELQLERVNVYYNEASGG 501
S KM +LHIQG +CGNQIGAKFWEVVC EHGIDPTGRYTG+S+LQLERVNVYYNEAS G
Sbjct: 48 SAKMREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCG 107
Query: 500 RYVPRAVLMDLESGTMDSVRSGLYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 321
R+VPRAVLMDLE GTMDSVR+G YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL
Sbjct: 108 RFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 167
Query: 320 DVVRKDGRS 294
DVVRK+ +
Sbjct: 168 DVVRKEAEN 176
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,404,849,014
Number of Sequences: 7387702
Number of Extensions: 340404849014
Number of Successful Extensions: 174486074
Number of sequences better than 0.0: 0
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