BLASTX 7.6.2
Query= RU16737 /QuerySize=517
(516 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|157357507|emb|CAO64065.1| unnamed protein product [Vitis vini... 69 1e-010
gi|38260634|gb|AAR15451.1| F-box protein [Arabidopsis arenosa] 57 7e-007
gi|38260688|gb|AAR15502.1| F-box protein [Arabidopsis arenosa] 55 3e-006
gi|15240821|ref|NP_196378.1| F-box family protein [Arabidopsis t... 54 3e-006
gi|34013883|gb|AAQ56109.1| F box protein family [Arabidopsis lyr... 54 4e-006
>gi|157357507|emb|CAO64065.1| unnamed protein product [Vitis vinifera]
Length = 874
Score = 69 bits (167), Expect = 1e-010
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +3
Query: 207 YPKRCSSSSSLAECDELLTEILVRVPATPLVRFKCVSKHWLSLISDPKFCHRH 365
+P SS+ +A +LLTEI +R P PL+RF+ VSK WLSLISDP FCHRH
Sbjct: 22 FPMSTSSAEQVAGNGDLLTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRH 74
>gi|38260634|gb|AAR15451.1| F-box protein [Arabidopsis arenosa]
Length = 421
Score = 57 bits (135), Expect = 7e-007
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Frame = +3
Query: 222 SSSSSLAECDELLTEILVRVPATPLVRFKCVSKHWLSLISDPKFCHRHTLQNPNTPISAV 401
SS++ +A+ D++L +IL +P L+RFK VSK WLSLI++P F +R N PIS
Sbjct: 26 SSATIVADIDDILIQILSLLPIKTLLRFKRVSKRWLSLITNPDFSNRVIKSNHPLPISGF 85
Query: 402 FRDTSHPP--FCFVLLPLDD 455
F H P F + + LDD
Sbjct: 86 F---LHSPRAFKYSFVSLDD 102
>gi|38260688|gb|AAR15502.1| F-box protein [Arabidopsis arenosa]
Length = 421
Score = 55 bits (130), Expect = 3e-006
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +3
Query: 222 SSSSSLAECDELLTEILVRVPATPLVRFKCVSKHWLSLISDPKFCHRHTLQNPNTPISAV 401
SS++ +A+ D++L +IL +P L+RFK VSK WLSLI++P F +R N PIS
Sbjct: 26 SSATIVADIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPDFSNRIIKSNHPLPISGF 85
Query: 402 FRDTSHP-PFCFVLLPLDDHHT 464
F + + FV L +D T
Sbjct: 86 FLHSPRAIKYSFVSLDDEDDAT 107
>gi|15240821|ref|NP_196378.1| F-box family protein [Arabidopsis thaliana]
Length = 420
Score = 54 bits (129), Expect = 3e-006
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 222 SSSSSLAECDELLTEILVRVPATPLVRFKCVSKHWLSLISDPKFCHRHTLQNPNTPISAV 401
SS++ +A+ D++L +IL +P L+RFK VSK WLSLI++P F +R N PIS
Sbjct: 26 SSATIVADIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHPLPISGF 85
Query: 402 FRDTSHP-PFCFVLLPLDDHHTRSSN 476
F + + FV L D + R S+
Sbjct: 86 FLHSPREIKYSFVSLDDDATNQRISS 111
>gi|34013883|gb|AAQ56109.1| F box protein family [Arabidopsis lyrata subsp.
lyrata]
Length = 421
Score = 54 bits (128), Expect = 4e-006
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +3
Query: 222 SSSSSLAECDELLTEILVRVPATPLVRFKCVSKHWLSLISDPKFCHRHTLQNPNTPISAV 401
SS++ +A D++L +IL +P L+RFK VSK WLSLI++P F +R N PIS
Sbjct: 26 SSATIVANIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPDFSNRIIKSNHPLPISGF 85
Query: 402 FRDTSHP-PFCFVLLPLDDHHT 464
F + + FV L +D T
Sbjct: 86 FLHSPRAIKYSFVSLDDEDDAT 107
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,919,240,014
Number of Sequences: 7387702
Number of Extensions: 397919240014
Number of Successful Extensions: 209897449
Number of sequences better than 0.0: 0
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