BLASTX 7.6.2
Query= RU19178 /QuerySize=607
(606 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|37572449|dbj|BAC98494.1| AG-motif binding protein-4 [Nicotian... 126 1e-027
gi|126343180|ref|XP_001373977.1| PREDICTED: hypothetical protein... 62 3e-008
gi|109463712|ref|XP_001078830.1| PREDICTED: hypothetical protein... 62 3e-008
>gi|37572449|dbj|BAC98494.1| AG-motif binding protein-4 [Nicotiana tabacum]
Length = 326
Score = 126 bits (315), Expect = 1e-027
Identities = 84/205 (40%), Positives = 114/205 (55%), Gaps = 19/205 (9%)
Frame = +3
Query: 3 QHALMEELWCATAISGVPSEDFSVDDLLDFSNGEFEDGSVEEEQELEEQEEEEEEDKDSV 182
Q ++++WC I+ VPS+DFSVDDLLDFS+ +F+DG Q L+E E++E+D S
Sbjct: 23 QQVFLDDIWCVAGINNVPSDDFSVDDLLDFSDKDFKDG-----QSLQELHEDDEKDSFSG 77
Query: 183 SEDSVENSNSSNFT-ESTLASQLAVPDDDLAELEWVSHFVDDSVSELSLLHPVS--KQKP 353
S NS SNF+ + + +L VP D+L LEW+S FVDDS SE SLL P K K
Sbjct: 78 SSQH-RNSQVSNFSCMDSFSGELPVPVDELENLEWLSQFVDDSTSEFSLLCPAGSFKDKT 136
Query: 354 ESLTENRSEPEARRLGQS-RLSWLPSQVPVKARSKRCRPAAGRFRSLWNPLGDSPSLTPC 530
+RSEP R + Q ++ P V K R+ R RP AGR S +P + S +P
Sbjct: 137 GGFQVSRSEPVVRPVVQKLKVPCFPLPVVQKPRTYRSRP-AGRKWSFSSPTVSADSCSPT 195
Query: 531 LSSPSSSSCSSGFSLSTPCLIFTNP 605
SS SS P ++F+NP
Sbjct: 196 SSSYGSS--------PFPSVLFSNP 212
>gi|126343180|ref|XP_001373977.1| PREDICTED: hypothetical protein [Monodelphis
domestica]
Length = 1008
Score = 62 bits (149), Expect = 3e-008
Identities = 51/186 (27%), Positives = 78/186 (41%)
Frame = -3
Query: 574 NENPEEQDDDDGEDKQGVKDGESPSGFHNDRNRPAAGLQRLLLALTGTCEGSHESLD*PS 395
+ N + S S N+ N ++ + + S S S
Sbjct: 566 SSNSSSSSSSSSSSSSSSSNSSSSSSSSNNSNSSSSSSSNSSSSSSSNSNSSSSSSSSSS 625
Query: 394 LLASGSDRFSVKDSGFCLLTGCRRESSETESSTK*ETHSSSAKSSSGTASWLARVDSVKL 215
+S S S S + SS + SS+ + SSS+ SSS ++S + +S
Sbjct: 626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSNSSSS 685
Query: 214 LELEFSTESSETESLSSSSSSSCSSSSCSSSTDPSSNSPLEKSRRSSTEKSSLGTPEIAV 35
S+ SS + + SSSSSSS SS+S SSS+ SS+S S SS+ SS + +
Sbjct: 686 SSSSSSSSSSSSNNSSSSSSSSSSSNSSSSSSSSSSSSSSNNSSSSSSSNSSSSSSSSSS 745
Query: 34 AHQSSS 17
+ SSS
Sbjct: 746 SSSSSS 751
>gi|109463712|ref|XP_001078830.1| PREDICTED: hypothetical protein [Rattus
norvegicus]
Length = 426
Score = 62 bits (148), Expect = 3e-008
Identities = 49/141 (34%), Positives = 68/141 (48%)
Frame = -3
Query: 439 TGTCEGSHESLD*PSLLASGSDRFSVKDSGFCLLTGCRRESSETESSTK*ETHSSSAKSS 260
+ + S S S +S S S S + SS + SS+ + SSS+ SS
Sbjct: 60 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 119
Query: 259 SGTASWLARVDSVKLLELEFSTESSETESLSSSSSSSCSSSSCSSSTDPSSNSPLEKSRR 80
S ++S +R S S+ SS + S SSSSSSS SSSS SSS+ SS+S S
Sbjct: 120 SSSSSSSSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 179
Query: 79 SSTEKSSLGTPEIAVAHQSSS 17
SS+ SS + + + SSS
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSS 200
Score = 62 bits (148), Expect = 3e-008
Identities = 49/141 (34%), Positives = 68/141 (48%)
Frame = -3
Query: 439 TGTCEGSHESLD*PSLLASGSDRFSVKDSGFCLLTGCRRESSETESSTK*ETHSSSAKSS 260
+ + S S S +S S S S + SS + SS+ + SSS+ SS
Sbjct: 243 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 302
Query: 259 SGTASWLARVDSVKLLELEFSTESSETESLSSSSSSSCSSSSCSSSTDPSSNSPLEKSRR 80
S ++S +R S S+ SS + S SSSSSSS SSSS SSS+ SS+S S
Sbjct: 303 SSSSSSSSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 362
Query: 79 SSTEKSSLGTPEIAVAHQSSS 17
SS+ SS + + + SSS
Sbjct: 363 SSSSSSSSSSSSSSSSSSSSS 383
Score = 60 bits (144), Expect = 1e-007
Identities = 48/141 (34%), Positives = 68/141 (48%)
Frame = -3
Query: 439 TGTCEGSHESLD*PSLLASGSDRFSVKDSGFCLLTGCRRESSETESSTK*ETHSSSAKSS 260
+ + S S S +S S S S + SS + SS+ + SSS+ SS
Sbjct: 167 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 226
Query: 259 SGTASWLARVDSVKLLELEFSTESSETESLSSSSSSSCSSSSCSSSTDPSSNSPLEKSRR 80
S ++S + S + S+ SS + S SSSSSSS SSSS SSS+ SS+S S
Sbjct: 227 SSSSSSSSSSSSSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 286
Query: 79 SSTEKSSLGTPEIAVAHQSSS 17
SS+ SS + + + SSS
Sbjct: 287 SSSSSSSSSSSSSSSSSSSSS 307
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,497,710,580
Number of Sequences: 7387702
Number of Extensions: 437497710580
Number of Successful Extensions: 219863961
Number of sequences better than 0.0: 0
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