BLASTX 7.6.2
Query= RU20048 /QuerySize=884
(883 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|124360124|gb|ABN08140.1| DNA-directed RNA polymerase, 14 to 1... 241 8e-062
gi|15242235|ref|NP_200007.1| DNA-directed RNA polymerase II, put... 238 4e-061
gi|15224039|ref|NP_178540.1| DNA-directed RNA polymerase II, put... 238 4e-061
gi|157360792|emb|CAO70393.1| unnamed protein product [Vitis vini... 235 4e-060
gi|115471967|ref|NP_001059582.1| Os07g0463100 [Oryza sativa (jap... 234 8e-060
>gi|124360124|gb|ABN08140.1| DNA-directed RNA polymerase, 14 to 18 kDa subunit
[Medicago truncatula]
Length = 145
Score = 241 bits (613), Expect = 8e-062
Identities = 121/145 (83%), Positives = 133/145 (91%), Gaps = 4/145 (2%)
Frame = -2
Query: 681 MADDDYNEMDIGYEDEPVEPEIEEGA-GEDVDN-NDDL--AGDAIETDDKEEQVPVERPR 514
MADDDY ++D+GYE+EP EPEIEEGA ED DN NDDL G+ IET++KE+ PVERPR
Sbjct: 1 MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPR 60
Query: 513 KTSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 334
+TSK+MTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 61 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120
Query: 333 DGSYEDWGVDELIVEDSWKRQVGGN 259
DGSYEDWGVDELIVEDSWKRQVGG+
Sbjct: 121 DGSYEDWGVDELIVEDSWKRQVGGD 145
>gi|15242235|ref|NP_200007.1| DNA-directed RNA polymerase II, putative
[Arabidopsis thaliana]
Length = 144
Score = 238 bits (607), Expect = 4e-061
Identities = 117/144 (81%), Positives = 131/144 (90%), Gaps = 3/144 (2%)
Frame = -2
Query: 681 MADDDYNEM-DIGYEDEPVEPEIEEGAGEDVD--NNDDLAGDAIETDDKEEQVPVERPRK 511
MAD+DYN++ D+GYEDEP EPEIEEG EDV+ NDD+ G+ IE +DK E PV+RPRK
Sbjct: 1 MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60
Query: 510 TSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 331
TSKFMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 330 GSYEDWGVDELIVEDSWKRQVGGN 259
GS+E+WGVDELIVEDSWKRQVGG+
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGGD 144
>gi|15224039|ref|NP_178540.1| DNA-directed RNA polymerase II, putative
[Arabidopsis thaliana]
Length = 144
Score = 238 bits (607), Expect = 4e-061
Identities = 119/144 (82%), Positives = 129/144 (89%), Gaps = 3/144 (2%)
Frame = -2
Query: 681 MADDDYNEM-DIGYEDEPVEPEIEEGAGEDVD--NNDDLAGDAIETDDKEEQVPVERPRK 511
MADDDYNE+ D+GYEDEP EPEIEEG ED D NDD+ D +ET+DK E PV+RPRK
Sbjct: 1 MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60
Query: 510 TSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 331
TSKFMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 330 GSYEDWGVDELIVEDSWKRQVGGN 259
SYE+WGVDELIVEDSWKRQVGG+
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGGD 144
>gi|157360792|emb|CAO70393.1| unnamed protein product [Vitis vinifera]
Length = 142
Score = 235 bits (599), Expect = 4e-060
Identities = 115/142 (80%), Positives = 129/142 (90%), Gaps = 1/142 (0%)
Frame = -2
Query: 681 MADDDYNEMDIGYEDEPVEPEIEEGAGEDVD-NNDDLAGDAIETDDKEEQVPVERPRKTS 505
MAD++YN++D+GYEDEP EPEIEEGA E+ + NN++ DA+E +KE VERPRKTS
Sbjct: 1 MADEEYNDVDMGYEDEPPEPEIEEGAEEEAENNNNEDVPDALEEQEKEVHETVERPRKTS 60
Query: 504 KFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 325
K+MTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS
Sbjct: 61 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 120
Query: 324 YEDWGVDELIVEDSWKRQVGGN 259
YEDWGVDELIVEDSWKRQVGG+
Sbjct: 121 YEDWGVDELIVEDSWKRQVGGD 142
>gi|115471967|ref|NP_001059582.1| Os07g0463100 [Oryza sativa (japonica
cultivar-group)]
Length = 142
Score = 234 bits (596), Expect = 8e-060
Identities = 114/141 (80%), Positives = 125/141 (88%), Gaps = 1/141 (0%)
Frame = -2
Query: 681 MADDDYNEMDIGYEDEPVEPEIEEGAGEDVD-NNDDLAGDAIETDDKEEQVPVERPRKTS 505
MA+DDYN+MD+GYEDEP EPEIEEGA E+ + NN+D D + +D +EQ RPRKTS
Sbjct: 1 MAEDDYNDMDMGYEDEPPEPEIEEGAEEEPENNNEDAVDDVVGAEDDKEQEKTARPRKTS 60
Query: 504 KFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 325
K+MTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDGS
Sbjct: 61 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGS 120
Query: 324 YEDWGVDELIVEDSWKRQVGG 262
YEDWGVDELIVEDSWKRQVGG
Sbjct: 121 YEDWGVDELIVEDSWKRQVGG 141
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,497,710,580
Number of Sequences: 7387702
Number of Extensions: 437497710580
Number of Successful Extensions: 219863961
Number of sequences better than 0.0: 0
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