BLASTX 7.6.2
Query= RU20432 /QuerySize=970
(969 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa] 393 2e-107
gi|2921510|gb|AAC04810.1| clp-like energy-dependent protease [Fr... 382 3e-104
gi|18391311|ref|NP_563893.1| CLPP6 (Clp protease proteolytic sub... 379 3e-103
gi|2827888|gb|AAB99906.1| ATP-dependent Clp protease proteolytic... 372 2e-101
gi|602758|gb|AAA81878.1| clp-like energy-dependent protease 372 3e-101
>gi|118485273|gb|ABK94496.1| unknown [Populus trichocarpa]
Length = 265
Score = 393 bits (1008), Expect = 2e-107
Identities = 199/265 (75%), Positives = 221/265 (83%), Gaps = 7/265 (2%)
Frame = +3
Query: 54 ASAFSAPLS----FSFASLPSVSVRKPTRSTVFATLRTPYGDAAGLSSGSSLKLDRKYVG 221
ASA SAP + F A PS+S+ R++V + L PY D+ S+ SL++D K
Sbjct: 4 ASAISAPATSFSIFPRAKSPSLSLFSHRRNSVVSALPRPYSDS---STRLSLRIDEKGFR 60
Query: 222 DTSTSYGAIEAKKGNPPVLPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSLVAQRVISQLV 401
D SY +EAK GNPP++PAVMTPGGP+DLSSVLFRNRIIFIGQP+NS VAQRVISQLV
Sbjct: 61 DAKQSYVTVEAKGGNPPIMPAVMTPGGPMDLSSVLFRNRIIFIGQPINSQVAQRVISQLV 120
Query: 402 TLATIDEEADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGVVCFGVAASQGALLLAGGEK 581
TLATIDE+ DIL+YLNCPGGSTYSVLAIYDCMSWIKPKVG VCFGVAASQGALLL+GGEK
Sbjct: 121 TLATIDEKTDILLYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLSGGEK 180
Query: 582 GMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQTRHKVDKMYVAFTGQSLETVQQYT 761
GMRYAMPNARIMIHQPQ GCGGHVEDVRRQVNEAVQ RHK+D+MY FTGQ LE VQQYT
Sbjct: 181 GMRYAMPNARIMIHQPQGGCGGHVEDVRRQVNEAVQARHKIDQMYATFTGQPLEKVQQYT 240
Query: 762 ERDRFLSVSEALEFGLIDGVLETEY 836
ERDRFLS SEA+EFGLIDG+LETEY
Sbjct: 241 ERDRFLSTSEAMEFGLIDGILETEY 265
>gi|2921510|gb|AAC04810.1| clp-like energy-dependent protease [Fritillaria
agrestis]
Length = 267
Score = 382 bits (980), Expect = 3e-104
Identities = 200/268 (74%), Positives = 224/268 (83%), Gaps = 6/268 (2%)
Frame = +3
Query: 48 MVASAFSAPLS-FSFASLPSVSVRKPTRSTVFATLRTPYGDAAGLSSGSS---LKLDRKY 215
M SA SAPL+ FS A + + +P+ S V + + D G+ G++ LKL
Sbjct: 1 MAPSAVSAPLALFSAAPREATATLRPSPS-VRIPFKPRFFDRCGMFGGTNALPLKLTDPA 59
Query: 216 VGDTSTSYGA-IEAKKGNPPVLPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSLVAQRVIS 392
+++ Y A IEAK+GNPP++PAVMTPGGPLDLSSVLFRNRIIFIGQPVNS VAQRVIS
Sbjct: 60 SCHSASRYDAVIEAKRGNPPMMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVIS 119
Query: 393 QLVTLATIDEEADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGVVCFGVAASQGALLLAG 572
QLVTLATIDEE+DILVYLNCPGGSTYS+LAIYDCMSWIKPKVG VCFGVAASQGALLLAG
Sbjct: 120 QLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAG 179
Query: 573 GEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQTRHKVDKMYVAFTGQSLETVQ 752
GEKGMRY MPNARIMIHQPQSGCGGHVEDVRRQVNEAVQ+RHK+D+MY AFTGQ+LE VQ
Sbjct: 180 GEKGMRYTMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDQMYAAFTGQTLEKVQ 239
Query: 753 QYTERDRFLSVSEALEFGLIDGVLETEY 836
+YTERDRF S SEALEFGL+DGVLETEY
Sbjct: 240 EYTERDRFFSASEALEFGLVDGVLETEY 267
>gi|18391311|ref|NP_563893.1| CLPP6 (Clp protease proteolytic subunit 6);
endopeptidase Clp [Arabidopsis thaliana]
Length = 271
Score = 379 bits (971), Expect = 3e-103
Identities = 194/253 (76%), Positives = 218/253 (86%), Gaps = 11/253 (4%)
Frame = +3
Query: 93 SLPSVSVRKPTRSTVFATLRTPYGDA--AGLS---SGSSLKLDRKYVGDTSTSYGAIEAK 257
S S + R P R V A L++PYGD+ AGLS SGS +K+D K + +G IEAK
Sbjct: 25 SFLSHNQRNPIRRIVSA-LQSPYGDSLKAGLSSNVSGSPIKIDNK-----APRFGVIEAK 78
Query: 258 KGNPPVLPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSLVAQRVISQLVTLATIDEEADIL 437
KGNPPV+P+VMTPGGPLDLSSVLFRNRIIFIGQP+N+ VAQRVISQLVTLA+ID+++DIL
Sbjct: 79 KGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDIL 138
Query: 438 VYLNCPGGSTYSVLAIYDCMSWIKPKVGVVCFGVAASQGALLLAGGEKGMRYAMPNARIM 617
+YLNCPGGSTYSVLAIYDCMSWIKPKVG V FGVAASQGALLLAGGEKGMRYAMPN R+M
Sbjct: 139 MYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVM 198
Query: 618 IHQPQSGCGGHVEDVRRQVNEAVQTRHKVDKMYVAFTGQSLETVQQYTERDRFLSVSEAL 797
IHQPQ+GCGGHVEDVRRQVNEA++ R K+D+MY AFTGQ LE VQQYTERDRFLS SEAL
Sbjct: 199 IHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEAL 258
Query: 798 EFGLIDGVLETEY 836
EFGLIDG+LETEY
Sbjct: 259 EFGLIDGLLETEY 271
>gi|2827888|gb|AAB99906.1| ATP-dependent Clp protease proteolytic subunit
[Arabidopsis thaliana]
Length = 271
Score = 372 bits (955), Expect = 2e-101
Identities = 190/253 (75%), Positives = 214/253 (84%), Gaps = 11/253 (4%)
Frame = +3
Query: 93 SLPSVSVRKPTRSTVFATLRTPYGDA--AGLS---SGSSLKLDRKYVGDTSTSYGAIEAK 257
S S + R P R V A L++PYGD+ AGLS SGS +K+D K + +G IEAK
Sbjct: 25 SFLSHNQRNPIRRIVSA-LQSPYGDSLKAGLSSNVSGSPIKIDNK-----APRFGVIEAK 78
Query: 258 KGNPPVLPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSLVAQRVISQLVTLATIDEEADIL 437
KGNPPV+P+VMTPGGPLDLSSVLFRNRIIFIGQP+N+ VAQRVISQLVTLA+ID+++DIL
Sbjct: 79 KGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDIL 138
Query: 438 VYLNCPGGSTYSVLAIYDCMSWIKPKVGVVCFGVAASQGALLLAGGEKGMRYAMPNARIM 617
+YLNCPGGSTYSVL IYDCMSWIKPKVG V FGVAASQGA LAGGEKGMRYAMPN R+M
Sbjct: 139 MYLNCPGGSTYSVLTIYDCMSWIKPKVGTVAFGVAASQGAFFLAGGEKGMRYAMPNTRVM 198
Query: 618 IHQPQSGCGGHVEDVRRQVNEAVQTRHKVDKMYVAFTGQSLETVQQYTERDRFLSVSEAL 797
IHQPQ+GCGGHVEDVRRQVNEA++ R K+D+MY AFTGQ LE VQQYTERDRFLS SEA
Sbjct: 199 IHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEAF 258
Query: 798 EFGLIDGVLETEY 836
EFGLIDG+LETEY
Sbjct: 259 EFGLIDGLLETEY 271
>gi|602758|gb|AAA81878.1| clp-like energy-dependent protease
Length = 275
Score = 372 bits (954), Expect = 3e-101
Identities = 196/258 (75%), Positives = 217/258 (84%), Gaps = 10/258 (3%)
Frame = +3
Query: 84 SFASLPSVSVRKPTRSTVFATLRTPYGDAA--GLSS---GSSLKLDRKYVG-DTSTSYGA 245
SF+SL S + R V + LR+PY D++ G SS G LK + G T++SYG
Sbjct: 21 SFSSLLS---SRSLRKNVVSVLRSPYSDSSDIGFSSKKLGIPLKFNEYESGAHTNSSYGV 77
Query: 246 IEAKKG-NPPVLPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSLVAQRVISQLVTLATIDE 422
I AK+G NPP++PAVMTP G LDLS+VLFRNRIIFIGQPVNS VAQ+VISQLVTLATIDE
Sbjct: 78 IVAKEGANPPIMPAVMTPVGALDLSTVLFRNRIIFIGQPVNSAVAQKVISQLVTLATIDE 137
Query: 423 EADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGVVCFGVAASQGALLLAGGEKGMRYAMP 602
ADIL+YLNCPGGSTYSVLAIYDCMSWIKPKVG VCFG AASQGALLLAGGEKGMRYAMP
Sbjct: 138 NADILIYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGAAASQGALLLAGGEKGMRYAMP 197
Query: 603 NARIMIHQPQSGCGGHVEDVRRQVNEAVQTRHKVDKMYVAFTGQSLETVQQYTERDRFLS 782
NARIMIHQPQSGCGGHVEDVRRQVNEAVQ+R KVDKMY AFTGQS+E +Q YTERDRF+S
Sbjct: 198 NARIMIHQPQSGCGGHVEDVRRQVNEAVQSRQKVDKMYAAFTGQSIEMIQTYTERDRFMS 257
Query: 783 VSEALEFGLIDGVLETEY 836
+EA+EFGLIDGVLETEY
Sbjct: 258 SAEAMEFGLIDGVLETEY 275
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,497,710,580
Number of Sequences: 7387702
Number of Extensions: 437497710580
Number of Successful Extensions: 219863961
Number of sequences better than 0.0: 0
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