BLASTX 7.6.2
Query= RU22111 /QuerySize=549
(548 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15242626|ref|NP_201116.1| HDA6 (HISTONE DEACETYLASE 6); histo... 242 2e-062
gi|169883796|gb|ACA97994.1| mutant histone deacetylase 6 [Arabid... 242 2e-062
gi|11066141|gb|AAG28475.1|AF195548_1 putative histone deacetylas... 236 6e-061
gi|162459945|ref|NP_001104901.1| histone deacetylase [Zea mays] 211 3e-053
gi|17017398|gb|AAL33653.1|AF440226_1 histone deacetylase [Zea mays] 211 3e-053
>gi|15242626|ref|NP_201116.1| HDA6 (HISTONE DEACETYLASE 6); histone deacetylase
[Arabidopsis thaliana]
Length = 471
Score = 242 bits (615), Expect = 2e-062
Identities = 121/173 (69%), Positives = 134/173 (77%), Gaps = 5/173 (2%)
Frame = -3
Query: 546 ADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDY 367
ADCLR+LRS+NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEP+NKLPYNEY+EYFGPDY
Sbjct: 294 ADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDY 353
Query: 366 TLHVDTCNMENLNSPKEMENIRNTLLEQLSRLPHAPSVPFQTTPPTTEVPEEAEERMDHR 187
TLHVD MENLN+PK+ME IRNTLLEQLS L HAPSV FQ TPP V +E E+ M+ R
Sbjct: 354 TLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETR 413
Query: 186 PKRRIWEG-VDYDSDPDDDDEKPWKYSNSAGLRGVKTEMRDVPDEMEEDEDHP 31
PK RIW G Y+SD DDDD+ YS RG T RD E E D+D+P
Sbjct: 414 PKPRIWSGTATYESDSDDDDKPLHGYS----CRGGATTDRDSTGEDEMDDDNP 462
>gi|169883796|gb|ACA97994.1| mutant histone deacetylase 6 [Arabidopsis
thaliana]
Length = 471
Score = 242 bits (615), Expect = 2e-062
Identities = 121/173 (69%), Positives = 134/173 (77%), Gaps = 5/173 (2%)
Frame = -3
Query: 546 ADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDY 367
ADCLR+LRS+NVPLMVLGGGGYTIRNVARCWCYETAVAVGVEP+NKLPYNEY+EYFGPDY
Sbjct: 294 ADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDY 353
Query: 366 TLHVDTCNMENLNSPKEMENIRNTLLEQLSRLPHAPSVPFQTTPPTTEVPEEAEERMDHR 187
TLHVD MENLN+PK+ME IRNTLLEQLS L HAPSV FQ TPP V +E E+ M+ R
Sbjct: 354 TLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETR 413
Query: 186 PKRRIWEG-VDYDSDPDDDDEKPWKYSNSAGLRGVKTEMRDVPDEMEEDEDHP 31
PK RIW G Y+SD DDDD+ YS RG T RD E E D+D+P
Sbjct: 414 PKPRIWSGTATYESDSDDDDKPLHGYS----CRGGATTDRDSTGEDEMDDDNP 462
>gi|11066141|gb|AAG28475.1|AF195548_1 putative histone deacetylase [Arabidopsis
thaliana]
Length = 471
Score = 236 bits (602), Expect = 6e-061
Identities = 119/173 (68%), Positives = 132/173 (76%), Gaps = 5/173 (2%)
Frame = -3
Query: 546 ADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDY 367
ADCLR+LRS+NVPLMVLGG GYTIRNVARCWCYETAVAVGVEP+NKLPYNEY+EYFGPDY
Sbjct: 294 ADCLRFLRSYNVPLMVLGGEGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDY 353
Query: 366 TLHVDTCNMENLNSPKEMENIRNTLLEQLSRLPHAPSVPFQTTPPTTEVPEEAEERMDHR 187
TLHVD MENLN+PK+ME IRNTLLEQLS L HAPSV FQ TPP V +E E+ M+ R
Sbjct: 354 TLHVDPSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEDDMETR 413
Query: 186 PKRRIWEG-VDYDSDPDDDDEKPWKYSNSAGLRGVKTEMRDVPDEMEEDEDHP 31
PK R W G Y+SD DDDD+ YS RG T RD E E D+D+P
Sbjct: 414 PKPRXWSGTATYESDSDDDDKPLHGYS----CRGGATTDRDSTGEDEMDDDNP 462
>gi|162459945|ref|NP_001104901.1| histone deacetylase [Zea mays]
Length = 458
Score = 211 bits (535), Expect = 3e-053
Identities = 95/141 (67%), Positives = 113/141 (80%), Gaps = 2/141 (1%)
Frame = -3
Query: 546 ADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDY 367
ADCLR+LRS+NVP+MVLGGGGYTIRNVARCWCYETAVAVGVEP+NKLPYN+YYEYFGPDY
Sbjct: 295 ADCLRFLRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDY 354
Query: 366 TLHVDTCNMENLNSPKEMENIRNTLLEQLSRLPHAPSVPFQTTPPTTEVPEEAEERMDHR 187
TLH+ ++ENLN+ K++ENI+N +LE LS++ H PS F P E PEE EE MD R
Sbjct: 355 TLHIQPKSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKR 414
Query: 186 P--KRRIWEGVDYDSDPDDDD 130
P + R+W G YDSD +D D
Sbjct: 415 PPQRSRLWSGGAYDSDTEDPD 435
>gi|17017398|gb|AAL33653.1|AF440226_1 histone deacetylase [Zea mays]
Length = 436
Score = 211 bits (535), Expect = 3e-053
Identities = 95/141 (67%), Positives = 113/141 (80%), Gaps = 2/141 (1%)
Frame = -3
Query: 546 ADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDY 367
ADCLR+LRS+NVP+MVLGGGGYTIRNVARCWCYETAVAVGVEP+NKLPYN+YYEYFGPDY
Sbjct: 273 ADCLRFLRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDY 332
Query: 366 TLHVDTCNMENLNSPKEMENIRNTLLEQLSRLPHAPSVPFQTTPPTTEVPEEAEERMDHR 187
TLH+ ++ENLN+ K++ENI+N +LE LS++ H PS F P E PEE EE MD R
Sbjct: 333 TLHIQPKSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKR 392
Query: 186 P--KRRIWEGVDYDSDPDDDD 130
P + R+W G YDSD +D D
Sbjct: 393 PPQRSRLWSGGAYDSDTEDPD 413
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,804,259,611
Number of Sequences: 7387702
Number of Extensions: 463804259611
Number of Successful Extensions: 251317205
Number of sequences better than 0.0: 0
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