BLASTX 7.6.2
Query= RU22450 /QuerySize=406
(405 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicag... 219 4e-056
gi|147838054|emb|CAN60923.1| hypothetical protein [Vitis vinifera] 219 4e-056
gi|157341046|emb|CAO47851.1| unnamed protein product [Vitis vini... 218 1e-055
gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third ... 211 9e-054
gi|15226523|ref|NP_179145.1| RBP36A (RNA polymerase II 36 kDa po... 209 5e-053
>gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
Length = 318
Score = 219 bits (557), Expect = 4e-056
Identities = 105/120 (87%), Positives = 114/120 (95%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SY R PRVKIRE++ DY+KFELRDTDASVANALRRVMI+EVPTVAIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLR +C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
>gi|147838054|emb|CAN60923.1| hypothetical protein [Vitis vinifera]
Length = 318
Score = 219 bits (557), Expect = 4e-056
Identities = 104/120 (86%), Positives = 116/120 (96%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SYQRFP++KIRE++ DY KFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEFHLRA+C +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
>gi|157341046|emb|CAO47851.1| unnamed protein product [Vitis vinifera]
Length = 318
Score = 218 bits (554), Expect = 1e-055
Identities = 103/120 (85%), Positives = 116/120 (96%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
MEG SYQRFP++KIRE++ DY KFELR+TDAS+ANALRRVMIAEVPTVAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCE+CSVEFHLRA+C +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit
[Medicago sativa]
Length = 184
Score = 211 bits (537), Expect = 9e-054
Identities = 100/115 (86%), Positives = 110/115 (95%)
Frame = -3
Query: 346 YQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDE 167
Y R PRVKIRE++ DY+KFELRDTDASVANALRRVMI+EVPT+AIDLVEIE+NSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 166 FIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
FIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLR +C +DQTLDV
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 115
>gi|15226523|ref|NP_179145.1| RBP36A (RNA polymerase II 36 kDa polypeptide A);
DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 319
Score = 209 bits (531), Expect = 5e-053
Identities = 98/120 (81%), Positives = 113/120 (94%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP++KIRE++ DY KFELR+TD S+ANALRRVMI+EVPTVAIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L ++C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,955,923,008
Number of Sequences: 7387702
Number of Extensions: 470955923008
Number of Successful Extensions: 259291540
Number of sequences better than 0.0: 0
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