BLASTX 7.6.2
Query= RU23524 /QuerySize=765
(764 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|147803430|emb|CAN62239.1| hypothetical protein [Vitis vinifera] 241 5e-062
gi|118489961|gb|ABK96777.1| unknown [Populus trichocarpa x Popul... 236 2e-060
gi|18400270|ref|NP_566476.1| small nuclear ribonucleoprotein, pu... 233 2e-059
gi|116783136|gb|ABK22805.1| unknown [Picea sitchensis] 225 4e-057
gi|115458610|ref|NP_001052905.1| Os04g0445800 [Oryza sativa (jap... 213 2e-053
>gi|147803430|emb|CAN62239.1| hypothetical protein [Vitis vinifera]
Length = 128
Score = 241 bits (614), Expect = 5e-062
Identities = 119/128 (92%), Positives = 125/128 (97%)
Frame = -3
Query: 600 MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERVIVGEL 421
MSWAGPED+YLSTSLASYLDKKLLVLLRD RKLLG+LRSFDQFANAVLEGACERVIVG+L
Sbjct: 1 MSWAGPEDIYLSTSLASYLDKKLLVLLRDNRKLLGILRSFDQFANAVLEGACERVIVGDL 60
Query: 420 YCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRK 241
YCD+PLGLYVIRGENVVLIGELD E+EELPPHMTRVS AEIKRAQKAEREASDLKGTMRK
Sbjct: 61 YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK 120
Query: 240 RMEFLDMD 217
RMEFLD+D
Sbjct: 121 RMEFLDLD 128
>gi|118489961|gb|ABK96777.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 128
Score = 236 bits (601), Expect = 2e-060
Identities = 116/128 (90%), Positives = 125/128 (97%)
Frame = -3
Query: 600 MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERVIVGEL 421
MSWAGPED+YLSTSLA+YLDKKLLVLLRDGRKL+G+LRSFDQFANAVLEGACERVIVG+L
Sbjct: 1 MSWAGPEDIYLSTSLANYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEGACERVIVGDL 60
Query: 420 YCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRK 241
YCD+ LGLYVIRGENVVLIGELD EREELPPHMTRVS AEI+RAQKAEREA+DLKGTMRK
Sbjct: 61 YCDIHLGLYVIRGENVVLIGELDLEREELPPHMTRVSEAEIRRAQKAEREATDLKGTMRK 120
Query: 240 RMEFLDMD 217
RMEFLD+D
Sbjct: 121 RMEFLDLD 128
>gi|18400270|ref|NP_566476.1| small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative [Arabidopsis thaliana]
Length = 128
Score = 233 bits (592), Expect = 2e-059
Identities = 114/128 (89%), Positives = 122/128 (95%)
Frame = -3
Query: 600 MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERVIVGEL 421
MSWAGPE++YLSTSLASYLD+KLLVLLRDGRKL+G LRSFDQFANAVLEGACERVIVGE
Sbjct: 1 MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60
Query: 420 YCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRK 241
YCD+PLGLYVIRGENVVLIGELD+EREELPPHM RVS AEIKRAQK EREAS+L+GTMRK
Sbjct: 61 YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120
Query: 240 RMEFLDMD 217
RMEFLD D
Sbjct: 121 RMEFLDFD 128
>gi|116783136|gb|ABK22805.1| unknown [Picea sitchensis]
Length = 172
Score = 225 bits (572), Expect = 4e-057
Identities = 111/136 (81%), Positives = 124/136 (91%)
Frame = -3
Query: 624 EEEEEEASMSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGAC 445
E E+E MSWAGPED++LSTSLASYLDKKLLVLLRDGRKL+G+LRSFDQFANAVLE A
Sbjct: 37 EFREQEEGMSWAGPEDIFLSTSLASYLDKKLLVLLRDGRKLIGILRSFDQFANAVLENAL 96
Query: 444 ERVIVGELYCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREAS 265
ER+IVG+LYCDLPLGLYVIRGENVVLIGELD EREELP +M VS EIKRAQKAER+A+
Sbjct: 97 ERIIVGDLYCDLPLGLYVIRGENVVLIGELDPEREELPANMIHVSATEIKRAQKAERDAT 156
Query: 264 DLKGTMRKRMEFLDMD 217
DLKG+MRKRMEFLD++
Sbjct: 157 DLKGSMRKRMEFLDLE 172
>gi|115458610|ref|NP_001052905.1| Os04g0445800 [Oryza sativa (japonica
cultivar-group)]
Length = 129
Score = 213 bits (540), Expect = 2e-053
Identities = 103/127 (81%), Positives = 117/127 (92%)
Frame = -3
Query: 597 SWAGPEDVYLSTSLASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERVIVGELY 418
SWAGP++++LSTSLA +LDKKL+VLLRDGRKLLG L SFDQFAN VL+GACERVIVGELY
Sbjct: 3 SWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELY 62
Query: 417 CDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRKR 238
CD+PLGLYVIRGENVVLIGELD E++ELP HMT VS AEI++A+KAEREA DLKG+MRKR
Sbjct: 63 CDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGSMRKR 122
Query: 237 MEFLDMD 217
MEFLD D
Sbjct: 123 MEFLDFD 129
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,948,520,484
Number of Sequences: 7387702
Number of Extensions: 490948520484
Number of Successful Extensions: 281824599
Number of sequences better than 0.0: 0
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