BLASTX 7.6.2
Query= RU23654 /QuerySize=963
(962 letters)
Database: GenBank nr;
7,387,702 sequences; 2,551,671,255 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15228805|ref|NP_188902.1| PBD1 (PROTEASOME SUBUNIT PRGB); pep... 351 5e-095
gi|15233580|ref|NP_193216.1| PBD2 (20S PROTEASOME BETA SUBUNIT 2... 344 1e-092
gi|147843860|emb|CAN79443.1| hypothetical protein [Vitis vinifera] 342 2e-092
gi|118483095|gb|ABK93457.1| unknown [Populus trichocarpa] 342 2e-092
gi|118489001|gb|ABK96308.1| unknown [Populus trichocarpa x Popul... 340 1e-091
>gi|15228805|ref|NP_188902.1| PBD1 (PROTEASOME SUBUNIT PRGB); peptidase
[Arabidopsis thaliana]
Length = 204
Score = 351 bits (900), Expect = 5e-095
Identities = 174/202 (86%), Positives = 186/202 (92%)
Frame = -3
Query: 849 MESIFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYI 670
ME +FGLVGN FAIVAADTSAVHSIL+HKNNEDKIMVLDSHKL+AASGEPGDRVQFTEY+
Sbjct: 1 MECVFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYV 60
Query: 669 QKNVSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYI 490
QKNVSLY+FRNGIPLTTAAAANFTRGELATALRKNPY VNILMAGYD E GA LYYIDYI
Sbjct: 61 QKNVSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYI 120
Query: 489 ASLHKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIK 310
A+LHKV+KGAFGYGSYF+LS MDR Y MSVEEAI LVDK I+EIRSRLVVAPPNFVIK
Sbjct: 121 ATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVVAPPNFVIK 180
Query: 309 IVDKDGAREYAWRESIKDAGVA 244
IVDKDGAR+YAWR+S+KD A
Sbjct: 181 IVDKDGARDYAWRQSVKDVTTA 202
>gi|15233580|ref|NP_193216.1| PBD2 (20S PROTEASOME BETA SUBUNIT 2); peptidase
[Arabidopsis thaliana]
Length = 199
Score = 344 bits (880), Expect = 1e-092
Identities = 171/199 (85%), Positives = 181/199 (90%)
Frame = -3
Query: 849 MESIFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYI 670
ME +FGLVGN FAIVAADTSAVHSIL+HKN EDKIM LDSHKL+AASGEPGDRVQFTEY+
Sbjct: 1 MECVFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYV 60
Query: 669 QKNVSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYI 490
QKNVSLYQFRNGIPL+TAAAANFTRGELATALRKNPY VNILMAGYDKE GA LYYIDYI
Sbjct: 61 QKNVSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYI 120
Query: 489 ASLHKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIK 310
A+LHKV+KGAFGYGSYF+LS MDR Y MSVEEAI LVDK I+EIRSRLV+APPNFVIK
Sbjct: 121 ATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVIAPPNFVIK 180
Query: 309 IVDKDGAREYAWRESIKDA 253
IVDKDGAREY WR S DA
Sbjct: 181 IVDKDGAREYGWRISTADA 199
>gi|147843860|emb|CAN79443.1| hypothetical protein [Vitis vinifera]
Length = 205
Score = 342 bits (877), Expect = 2e-092
Identities = 168/198 (84%), Positives = 184/198 (92%)
Frame = -3
Query: 849 MESIFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYI 670
ME +FGLVG+ FA+V AD+SAVHSILVHK+NEDKIMVLDSHKL+ ASGE GDR QFTEYI
Sbjct: 1 MECVFGLVGDGFALVVADSSAVHSILVHKSNEDKIMVLDSHKLLGASGEGGDRAQFTEYI 60
Query: 669 QKNVSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYI 490
QKNV+LYQFRNGIPLTTAAAANFTRGELATALRKNPY VNIL+AGYDK+ G LYYIDYI
Sbjct: 61 QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYAVNILLAGYDKDIGPSLYYIDYI 120
Query: 489 ASLHKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIK 310
ASLHK+EKGAFGYGSYF+L++MDR YH GM+VEEA+ LVDK I+EIRSRLVVAPPNFVIK
Sbjct: 121 ASLHKIEKGAFGYGSYFSLAMMDRHYHSGMTVEEAVDLVDKCIMEIRSRLVVAPPNFVIK 180
Query: 309 IVDKDGAREYAWRESIKD 256
IVDKDGAREYAWRESIKD
Sbjct: 181 IVDKDGAREYAWRESIKD 198
>gi|118483095|gb|ABK93457.1| unknown [Populus trichocarpa]
Length = 209
Score = 342 bits (877), Expect = 2e-092
Identities = 170/206 (82%), Positives = 185/206 (89%)
Frame = -3
Query: 849 MESIFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYI 670
ME +FGLVGNDF IV ADTSAV+SILVHK NEDKIM LDSHKLIAASGE GDRVQFTEYI
Sbjct: 1 MECVFGLVGNDFVIVVADTSAVNSILVHKTNEDKIMKLDSHKLIAASGESGDRVQFTEYI 60
Query: 669 QKNVSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYI 490
QKNV+LY FRNGIPLTTAAAANFTRGELATALRKNPY VNIL+AG+D+E G LYYIDYI
Sbjct: 61 QKNVALYHFRNGIPLTTAAAANFTRGELATALRKNPYMVNILLAGFDRETGPSLYYIDYI 120
Query: 489 ASLHKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIK 310
A+LHKV+KGAFGYGS+F LS+MDR YH GMSVEEA+ LVDK I+EIRSRLVVAPPNFVIK
Sbjct: 121 ATLHKVDKGAFGYGSFFCLSMMDRHYHSGMSVEEAVELVDKCIMEIRSRLVVAPPNFVIK 180
Query: 309 IVDKDGAREYAWRESIKDAGVAGA*G 232
IVD+DGAREYAWRES+KD A + G
Sbjct: 181 IVDRDGAREYAWRESVKDTPTAQSEG 206
>gi|118489001|gb|ABK96308.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 209
Score = 340 bits (871), Expect = 1e-091
Identities = 168/202 (83%), Positives = 183/202 (90%)
Frame = -3
Query: 849 MESIFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYI 670
ME +FGLVG+ F IVA+DTSAV+SILVHK NEDKIM LDSHKL+AASGE GDRVQFTEYI
Sbjct: 1 MECVFGLVGDGFVIVASDTSAVNSILVHKTNEDKIMKLDSHKLVAASGESGDRVQFTEYI 60
Query: 669 QKNVSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYI 490
QKNV+LYQFRNGIPLTTAAAANFTRGELATALRKNPY VNIL+AGYDKE G LYYIDYI
Sbjct: 61 QKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYMVNILLAGYDKETGPSLYYIDYI 120
Query: 489 ASLHKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIK 310
A+LHKV++GAFGYGSYF LS+MDR YH GMSVEEA+ LVDK I EI+SRLVVAPPNFVIK
Sbjct: 121 ATLHKVDRGAFGYGSYFCLSMMDRHYHSGMSVEEAVELVDKCITEIQSRLVVAPPNFVIK 180
Query: 309 IVDKDGAREYAWRESIKDAGVA 244
IVD+DGAREYAWRES+KD A
Sbjct: 181 IVDRDGAREYAWRESVKDTPTA 202
Database: GenBank nr
Posted date: Wed Dec 03 02:04:20 2008
Number of letters in database: 2,551,671,255
Number of sequences in database: 7,387,702
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,742,244,830
Number of Sequences: 7387702
Number of Extensions: 497742244830
Number of Successful Extensions: 289091665
Number of sequences better than 0.0: 0
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